1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGATGAGAAGTGGGTTCCTGATTCAGATATTATTACTCAAACATTGGAAGAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcatttggcttatagatctagttgttcttagttgtacattgctttgaatttttagaaaaatgcatgatgaactcatacatgcttaaacacagtttt...
species | Glycine max |
transcript | GLYMA11G33700.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|209722386|gb|BW665859.1|BW665859
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|213609040|gb|DB957428.1|DB957428
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGANAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|7147501|gb|AW509423.1|AW509423
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTGTCTCANGAGCAAGGATCCEST: gi|151403447|gb|EV273257.1|EV273257
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGCAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|192299879|gb|FG990087.1|FG990087
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAA-GATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|14011917|gb|BG726839.1|BG726839
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|120534693|gb|EH262826.1|EH262826
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|298165886|gb|HO008857.1|HO008857
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|120534677|gb|EH262810.1|EH262810
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|10233723|gb|BE802611.1|BE802611
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|12691145|gb|BG157481.1|BG157481
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|209705734|gb|BW661402.1|BW661402
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|11688459|gb|BF596135.1|BF596135
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGNGTCAAAGATCTTTTCAACATTTATTGGTTNTCTCAAGAGCAEST: gi|20813171|gb|BQ297649.1|BQ297649
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCA
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCEST: gi|5677088|gb|AI938218.1|AI938218
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
EST: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGC GGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
genomic: GAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcattt ... ttttctttagGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGAGAAGTGGGTTCCTGATTCAGATATTATTACTCAAACATTGGAAGAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCgtatgcatttggcttatagatctagttgttcttagttgtacattgctttgaatttttagaaaaatgcatgatgaactcatacatgcttaaacacagtttt
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