Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAGACACCTTCATACCTGAGGGTAGAAAGCTTAGAGATCCAAGGAGGCTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAGgtattgacttgtaaactgttctgttcatagtaaactcctctccaagcatgaatgttatgggaatatattaattattatcttgtttagtatgcttggtctg...
Basic information
species | Glycine max |
transcript | GLYMA11G33660.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G33660.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g14490.2 (Oryza sativa), 5'ss of exon 4
TGAGAGACACCTTCATACCTGAGGGTAGAAAGCTTAGAGATCCAAGGAGGCTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAGgtattgacttgtaaactgttctgttcatagtaaactcctctccaagcatgaatgttatgggaatatattaattattat---cttgtt--tagtatgcttggtctg------
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TGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGgta---attggtg------ccttttaatag-aagctatttgttgtttctta-tgtcacgccagcattttaacctttctgcctttgttcgtgctattctagaacaagtttca
upper sequence: GLYMA11G33660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G174315_T01 (Zea mays), 5'ss of exon 4
TGAGAGACACCTTCATACCTGAGGGTAGAAAGCTTAGAGATCCAAGGAGGCTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAGgtattgacttgtaaactgttctgttcatagtaaactcctctccaagcatgaatgttatgggaatatattaattattatcttgttta---gtatgcttggtctg--
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TGAGAGATACATTTAAACAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatcatgtcat----tgcaaatagcatcttcccctgcttgcg-aattgctcttttctttttttatgtcataaataatataaacaaaaacctactcttctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335105|gb|CO978971.1|CO978971EST: CTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAG ATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAG
genomic: CTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAGgtattgactt ... gtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAGACACCTTCATACCTGAGGGTAGAAAGCTTAGAGATCCAAGGAGGCTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAGgtattgacttgtaaactgttctgttcatagtaaactcctctccaagcatgaatgttatgggaatatattaattattatcttgtttagtatgcttggtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA