1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTATCTGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATCTTTCACATCAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacataattgaattgctcagttttagttgtatctaagtactactaattaacaacaaagcaaatttattacttgtgctttctgcaaccattctttggtttatgcacgagtatgtactcattgtttcacaaaatatgcaatgcag
species | Glycine max |
transcript | GLYMA11G33280.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|17021946|gb|BM092980.1|BM092980
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|15662614|gb|BI699985.1|BI699985
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|7924037|gb|AW830099.1|AW830099
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAA GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|8283443|gb|BE021004.1|BE021004
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTNTGEST: gi|13479981|gb|BG509324.1|BG509324
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|308222675|gb|HO760585.1|HO760585
genomic: CTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|16346468|gb|BI972072.1|BI972072
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGEST: gi|14011981|gb|BG726903.1|BG726903
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
EST: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG GTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacata ... tgcaatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATCTGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATCTTTCACATCAACTATCTTGGTGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtaaaacataattgaattgctcagttttagttgtatctaagtactactaattaacaacaaagcaaatttattacttgtgctttctgcaaccattctttggtttatgcacgagtatgtactcattgtttcacaaaatatgcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT