1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAAGATATCACCAATAGAAGTGGATGCTGTTCTCTTTCACATCCAGAAATTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataatttatttttggtttttacacaaatgtgctcaaaagttgagtaaatgaccattttttattagttctttgaagtttgtattcatcatatcttttttaacttttgatag
species | Glycine max |
transcript | GLYMA11G31310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|16277773|gb|BI942555.1|BI942555
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|21256093|gb|BQ452981.1|BQ452981
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|21889797|gb|BQ743010.1|BQ743010
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGCTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|151406238|gb|EV276053.1|EV276053
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|16346137|gb|BI971732.1|BI971732
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|13125128|gb|BG315698.1|BG315698
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: GCTCAAGCAGTTGCTTTTGGAGTGACCTGATGCTCAAGTATGGAGAGGAG ATATATTTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAEST: gi|58024866|gb|CX711607.1|CX711607
genomic: GCTCAAGCAGTTGCTTTTGGAGTG-CCTGATGC-CAAGTATGGAGAGGAGgtataattta ... cttttgatagATATA-TTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGA
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|16105045|gb|BI892785.1|BI892785
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAGEST: gi|58018249|gb|CX704991.1|CX704991
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
EST: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAG ATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
genomic: TTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataattta ... cttttgatagATATATTGTGCTGTCATCCCAAGAGAAGGATCAAACGTTGATGAGGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGATATCACCAATAGAAGTGGATGCTGTTCTCTTTCACATCCAGAAATTGCTCAAGCAGTTGCTTTTGGAGTGCCTGATGCCAAGTATGGAGAGGAGgtataatttatttttggtttttacacaaatgtgctcaaaagttgagtaaatgaccattttttattagttctttgaagtttgtattcatcatatcttttttaacttttgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG