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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACATTTAGTCGGATAGATCCTGGAGGCAAACTAGTTATGGGTTTCAGAAAAGCATCAAATTCTACAGATACACAGgttgtgatacaatttccattttaccatgtgtggcctcttctttgaataatacatctttattattattattatttctgttggtgaatatgataaatggctattgtttaaacag

Basic information

species Glycine max
transcript GLYMA11G31270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 7
TAACATTTAGTCGGATAGATCCTGGAGGCAAACTAGTTATGGGTTTCAGAAAAGCATCAAATTCTACAGATACACAGgttgtgatacaatttcc--attttaccatgtgtggcctcttctttgaataatacat-ctttattattattattatttctgttggtgaatatgataaatggctattgtttaaacag
| || |||||||||||||| |||||||| ||||| |||||||| ||| | || ||  ||||  ||     |   |  ||   | || | |||||  |  ||        |    | || |      ||| | |  || | | |  || ||   |   ||  | ||| |  | |   | || | | |  ||||
TGACTTTTAGTCGGATAGAACCTGGAGGGAAACTTGTTATGGGCTTCCGGAAGGCCACAAACACTGTCAGTTTGCCAgtaa-gttagattttcctaacattcttcctactaatttattttcctgcaaatgcttgtttcactttcctttttcccttcctttatcaatgtttttat--gttact-tctgtacag

upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 7
TAACATTTAGTCGGATAGATCCTGGAGGCAAACTAGTTATGGGTTTCAGAAAAGCATCAAATTCTACAGATACACAGgttgtgatacaatttccattttaccatgtgtggcctcttctttgaataatacatctttattattattattatttctgttggtgaatatgataaatggctattgtttaaacag
| || |||||||| |||||||||||||| ||||| |||||||| ||  | || ||  ||||| ||     |   |  ||   | || | |||||||   || ||    ||    |  |   | |  |   || ||  |  | || || ||||  |   ||  ||| |    |    |            
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaa-gctagattttccatcagactat---cggttgttgttgcaagtgcttgttcctttctcatgtttttgtttcaatgtttgtttattacttttacacag-----------

upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 7
TAACATTTAGTCGGATAGATCCTGGAGGCAAACTAGTTATGGGTTTCAGAAAAGCATCAAATTCTACAGATACACAGgttgtgatacaatttccattttaccatgtgtggcctcttctttgaataatacatctttattattattattatttctgttggtgaatatgataaatggctattgtttaaacag
| || |||||||| |||||||||||||| ||||| |||||||| ||  | || ||  ||||| ||     |   |  ||   | || | |||||||   |  || | | ||   | |    | |  |   | || ||     || | || | | |   |  || |  |   |   || | ||||  |||
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaa-gttagattttccataagataatctattgctgatgc---aagtgcttgtttttcatctcctttctcatgtttttgcttcgatgt--ttgtttattact-tttacgcag