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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgacttggggataatggttgtcttgctgtctgataagaaagaagaaagaattcgggcataaatatata...

Basic information

species Glycine max
transcript GLYMA11G20840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g41590.1 (Oryza sativa), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgacttggggataatggttgtcttgctgtctgataagaaagaagaaagaatt--cgggcataaatatata-
  || |||||||||||||||| |||||||| ||||| || || || || ||| |||  ||||||||||| ||||||||||||||||| ||||  || |||||   |  ||| |||  | |     |    | |  | |     |    ||  | ||| || |  |||   | |    |||| ||   | |  |  || | || 
ACTGCTGAAAGGTCGTAATGCATGGTATGGGCAGAAATTAGCTAAGGGTGAACTGACTCTTGAAATGGGGGACAGTATCAAGGGCAAAGGGACTATCCAGgttggtgctaccttcttaatgatgtaaatctttc-catacttctgggtgtgtttttggtgccgaatagccatgtgctaagatttgctgtgattttatctttag

upper sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 4
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgt-attttgtacattcaaatttcaacatgcttgtgacttgg--ggataatggttgtcttgctgtctgataagaaagaagaaagaattcgggcataaatatata------------------------------------
  |  |||||||||| |||||||||||||| || | | | || || || ||| |||||| ||| ||||| ||||| |||||||| ||||||||||||||||| || |  || |   |    | |   | |  |  | ||    | ||  ||   || ||  ||    ||     |    |||   | |       |  | ||                                     
TCTCCTGAAAGGTCGCAATGCGTGGTATGGGCAAATGCTAGCGAAGGGAGAACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcataaaactactcattattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacag

upper sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 4
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgacttggggataatggttg--tcttgctgtctgataagaaagaagaaagaattcgggcataaatatata----
 |||||||||||||||||||| |||||||| |||||||| || ||||| |||||||   | ||||||||||||||||| || || || ||||  ||||||||||   |  | || || |||   |      |  ||||      | ||  ||  | |  ||   ||| |  |    |  ||  || | |       |  ||     
ATTGTTGAAAGGTCGTAATGCATGGTATGGGCAGAAGTTAGCTAAAGGTGAATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtat---gcccttttaattttggtcgacaacgaaacttcaaagaactgcatgaatatgcctaaatga-atcatgtgatgaattatcctgttgccgttccatttcag

upper sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 4
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgacttggggataatggttgtcttgctgtctgataagaaagaagaaagaattcgggcataaatatata------
  | || |||||||| ||||| |||||||| || | | | ||||| || || ||||| | ||| |||||||| ||||||||||| ||||| ||||||||||||     |  | | |  |||     | | | |    | |   || |   ||    | ||||  |      | |  |    || ||  |   ||||| |       
TCTCTTAAAAGGTCGCAATGCATGGTATGGGCAAATGCTTGCCAAGGGAGAGTTGAGTCCTGACATGGGTGATAGTATCAAGGGGAAGGGAATGATTCAGgta----atggaatgacttttttctttccattttgtcttgttttatt--ctgagaagatgtcaaagctattatagtactacatccgttctcgaatatttgtcgccc

upper sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G173195_T01 (Zea mays), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattt--tgtacattcaa-atttcaacatgcttgtgacttg--gggataatggttgtcttgctgtctgataagaaagaagaaag--aattcgggcataaatatata------
  || |||||||||| ||||| |||||||| |||||||| || || || ||| |||  || |||||||| ||||| ||||||||||| ||||  || ||||| | |  ||   |  ||  ||||  |||    ||    |||     ||    | || |||    |   |     | |    | |   ||||         | | |       
ACTGCTGAAAGGTCGCAATGCATGGTATGGGCAGAAGTTAGCTAAGGGAGAACTGACTCTAGAAATGGGGGACAGCATCAAGGGCAAAGGGACTATCCAGgtttgtgctgccaacccaccatttggaca-atgtgaagtttgcttaaatgccaggtgccttttgcttaaacgcttaggctatatgctgattcttattcgtttctgtgatctag

upper sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgact-tggggataatggttgtcttgctgtctgataagaaagaagaaagaattcgggcataaatatata----
||||||||||||||||||||| |||||||| || ||||| ||  |||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||   ||||  ||  | ||  |  |   | |||||| |   |  |||   |   || |          || |     |    || |   | ||||| | |    
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgta---tgtatctttgagtt--agaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgatatgttgagtgttttgtataaaaatagaaagtca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208268525|gb|GE067266.1|GE067266
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAG
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAG
EST: gi|208334813|gb|GE127018.1|GE127018
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAG
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAG
EST: gi|207715704|gb|GD699282.1|GD699282
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208043816|gb|GD841556.1|GD841556
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCCACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208334902|gb|GE127051.1|GE127051
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208100262|gb|GD898418.1|GD898418
EST:     ATTGAGTCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: ATTGAG-CCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|207826449|gb|GD799504.1|GD799504
EST:     GGCAA-GGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACGTTAGCCAGTCCAGCTT
genomic: GGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTAC-TTAGCCAGTCCAGCTT
EST: gi|193714616|gb|FK650679.1|FK650679
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208237234|gb|GE033842.1|GE033842
EST:     CAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: CAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208189267|gb|GD986079.1|GD986079
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGTCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193387580|gb|FK350029.1|FK350029
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208298362|gb|GE094963.1|GE094963
EST:     TTTGAGTCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: -TTGAG-CCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193343923|gb|FK313223.1|FK313223
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208114601|gb|GD912548.1|GD912548
EST:     TATCAAGGGCAAGGGGATGATTTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTT
genomic: TATCAAGGGCAAGGGGATGA-TTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTT
EST: gi|193589017|gb|FK543593.1|FK543593
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208215417|gb|GE011116.1|GE011116
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193644219|gb|FK590328.1|FK590328
EST:     GATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208279071|gb|GE077534.1|GE077534
EST:     GATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193308907|gb|FK276191.1|FK276191
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGAGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208075555|gb|GD874316.1|GD874316
EST:     GGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: GGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193319640|gb|FK285147.1|FK285147
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|207757009|gb|GD728091.1|GD728091
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAGGGGGATGGTTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|207773530|gb|GD744556.1|GD744556
EST:     ATTTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: A-TTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208034851|gb|GD836847.1|GD836847
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|207761931|gb|GD735058.1|GD735058
EST:     GATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|21595433|gb|BQ610478.1|BQ610478
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193478645|gb|FK447588.1|FK447588
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTA
EST: gi|193388334|gb|FK356159.1|FK356159
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193711765|gb|FK647864.1|FK647864
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|207764277|gb|GD735306.1|GD735306
EST:     GATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193625356|gb|FK575202.1|FK575202
EST:     AGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208208392|gb|GE004743.1|GE004743
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193402264|gb|FK368477.1|FK368477
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|18734350|gb|BM528131.1|BM528131
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193427265|gb|FK393473.1|FK393473
EST:     GGGATGATTCAG                         GGAG-CTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: GGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|254338244|gb|GR849769.1|GR849769
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|193429696|gb|FK393664.1|FK393664
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208113349|gb|GD913340.1|GD913340
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208246104|gb|GE045718.1|GE045718
EST:     CAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: CAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208046725|gb|GD849561.1|GD849561
EST:     GATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
EST: gi|208326022|gb|GE121930.1|GE121930
EST:     AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAG                         GGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA
genomic: AATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgta ... tgtgttgtagGGAGTCTCTGCTGTTAGGGCCTTTTATGAGCTACTTAGCCAGTCCAGCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgacttggggataatggttgtcttgctgtctgataagaaagaagaaagaattcgggcataaatatata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaaa