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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtagtattcatggtacttaactggttaactactttttctgtctcagtgaaaacaattttcctgagcctctttccttacatgcatgacag

Basic information

species Glycine max
transcript GLYMA11G20690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 4
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtagtattcatggtacttaac-tggttaactactttttctgtctcagtgaaaacaatt------------ttcctgagcctctttccttacatgcatgacag
|||||||||||  ||||||  || ||||||||| |||| | |||||||||||| || ||||||||||| |||||||| ||||      | ||  |||| ||     |  | | ||||   ||| ||    | ||  |||            ||||  | | |  |   |  ||| ||  ||||
GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatt-tactcaatactatccaatcctttaagtgtatcctccataagtattccgggttttggattccataacattatgtttatcattcacaacag

upper sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 4
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtagtattcatggtacttaactggttaactactttttctgtctcagt-gaaaacaattttcctgagcctcttt-ccttacatgcatgacag
|||||| |||| |||||||  |||||||||| | |||||||| |||||||||| |||||||| |||||||||||||| |||||   ||  |    | || | || |||  |  | || | ||| |  | || ||||  ||   | ||  |  ||   ||  ||| || ||||
GATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTGgtaagtgtgaaatcaa----atttcaatg-ttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacag

upper sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 4
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtagtattcatggtacttaactggttaactactttttctgtctcagtgaaaacaattttcctgagcctctttccttacatgcatgacag
|||||||||||||| |||| ||| ||||||||| |||||||||  || ||||||||||| |||||||| |||||||| ||  | ||  |  ||| | || | |  |||| | ||          ||  ||||     |||| | ||| || |  | | ||      ||||
GATGAAAATGGGAATAAGACGATCAATGAGTATGTTCGTGAGTACAAGATTGGTTCTGGAAGCTATGGCAAAGTGgtaagcatggtgctagtggcattttattctttaattgct----------caaagaaa--tggtttctttagcttcctgtcctgcacatgcaacag