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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag...

Basic information

species Glycine max
transcript GLYMA11G15230.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 5'ss of exon 2
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
| || ||||| ||||||||    || |||||||||||||||||||  || || ||||| ||||||||||||||||| ||||||||||||||  ||||||||| |  ||||          | ||||    ||   | |   | |||||  || ||  |||   |     | |   |  |    || ||| | |       
TTGTCTTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaactcaccttcctttgttca----tggctgaatacgcttcattctgtat-gttgacaacttggtgtatcgattttctgt-aatacag-------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
|||| |||||||| |||||    || ||||||||||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| |||||  ||||||||| ||||  |   |    |||      | | | | | | | | |   || || | | |  ||||    | |||       |                   
TGGTCTTCATTGTTGACCTTAAGGCTGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTACGACATCCAGGCAAAGAAAGTGAACACTCTGATCAGgttagcactttccttcatacttcattttatcgcttg-atttgctaggtagtgtagt-taactgaccctacttgtcttccag-------------------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G083253_T04 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
|||| |||||||| |||||    || ||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| || |||||||||||||||| ||||  |     |     |||   |  ||  |  | |  ||   |  ||||  | |   ||   | | | || | ||   ||| |            
TGGTCTTCATTGTTGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCCGTCAAGAAGATGTATGACATCCAGGCAAAGAAGGTCAACACCTTGATCAGgttagcacttgccccagtgtaattttttcctg-cacgatttattatgttgtgca--actaaagagttattcttatcg-tgtctgtgcag-----------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G124411_T04 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
| || ||||||||||||||    || ||||||||||||||||||| ||| || ||||| ||||||||||| ||||||||||| || |||||| ||||||||| ||||  |  |  |    ||||   | |||    ||||  | | ||  ||    | ||    | |   ||||| | ||   ||    |||        
TTGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcatttggtccagtgttattt--tcttgtgcataatt-tattatgttgtgcaactgtgagttattcttgattg-tgtctgtcctgtccag------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G166659_T01 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
|||| || ||||| |||||    || |||||||| |||||||||| ||| || ||||| ||||||||||| || || ||||| || |||||| ||||||||| |||   |   |    | | ||   |||||    ||||  | | ||  ||    | ||    |||   |||||| ||    |                
TGGTCTTTATTGTTGACCTCAAGGCAGACAAGAAAAAGATCAAGGCTGCGGTCAAGAAGATGTATGACATTCAAGCAAAGAAGGTCAACACCCTGATCAGgttagcgctttgct--ccagtgttattttttgtgcataatt-tgttattttgtgcaactg--agtgattcttgatgtgtccatgcag-------------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G172153_T01 (Zea mays), 5'ss of exon 11
---TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
   |||| ||||||||||||||    || ||||||||||||||||||| ||| |  ||||   |||||||||| ||||||||||| || |||||| |||||| || ||||  |  |  |    ||||   | |||    ||||  | | ||  ||    ||||    | || | | |   |||   ||  |            
CTCTGGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGCCAAGA---TGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAAgttagcatttggtccagtgttattt--tcttgtgcataatc-tattatgttgtgcaattgtgagttaattcttaactgtgtctgtccag-----------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaacta---tttaatgactattcagttttgatagtaatggtttcataa-tgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
| || |||||||| ||| | ||||| |||||||| |||||||| ||||| || ||||| ||||||||||| ||| |||||||||| |||||| | || |||| | ||   |   || | |||    |  ||||   ||   ||||  | || | || ||  |||   ||| |                                
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgt--atgcag-------------------------------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
| ||||||||||| ||| | ||||| |||||||||||||| |||||||| || ||||| ||||||||||||||| |||||||||| |||||  | |||||||         ||||| || ||||    | ||| ||   || | | | | || ||||| | | |  | ||||||       | ||    |    || |||
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtac-------tttaaagagtatttttctatga-agccttgttgtgagattg-attat-gttcaatatatttgaca--ctatggtttggttttgttacag

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgag---caactatttaatgactattcagttttgatagtaat-ggtttcataatgcattattgctgatgaaatttga--tgggtggtagtgaattccgttttcag
||||||||||||| ||| | ||||| |||||||| |||||||| ||||| |||||||| ||||| || || ||| |||||||||||||||| |||||||||| |    ||   ||| | | |||   ||   |  || ||  | || |    || | |  |||  |  | | |       | | || |    |             
TGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGgtaatttccattaattcactcacttaacaacatgcattgtttttgggtagggaaaggaaaattcttctttacaccaaggctagatgattaaaagaaataa------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaa-atttgatgggtggtagtgaa--ttccgttttcag----
||||||||||||| ||| | |||||| ||||||||||||| |||||||| || || || |||||||| || ||| |||||||||| || ||| ||||||||| | |||   ||| ||     | || || |  |  | ||  |  |  | |  |     | |  || | | | |||    | ||    |  || |    | ||    
TGGTTTTCATTGTTGACATTCGTGCCAACAAGAAGAAGATAAAGGATGCTGTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgt-atcaatatttttat-----tccaattatattttttattatccctgagtatacagcagttattggatagtcgataaa-gatatcagacttttcaaagttagattc

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 5'ss of exon 2
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact-atttaatgactattcagt--tttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
| || |||||||| ||| | ||||| ||||| |||||||| ||||||||  ||||||||||||||||||| ||| |||||||||| || ||||||||||||| |  |  | ||||     ||  ||||   ||  || | |||  ||    | |   || |   |    | | || ||  |   ||     ||  |||  || 
TTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGgtaaagacttcattttgaatcttctcagcagttcaattgaaattattg-gcatttttttttcagttgcaacaattcatatg-attatcattttttgttggca-

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagca-actatttaatgactattcagttttgatagtaat----ggtttcataa--tgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
|||||||||| || ||  |||| |||||||||||||||||||| || ||||| ||||| ||||| ||||| ||| ||||||| || || || ||||||||||||  |   | |   |||  |  |   |   |  |  | |    |||||   ||  ||  || ||||   ||     || || || |      |||          
TGGTTTTCATCGTGGATGTGCGCGCCGACAAGAAGAAGATCAAAGAGGCCGTCAAGAAGATGTACGACATTCAGACCAAGAAGGTCAATACTTTGATCAGgtgattatgttttcccatgctttatttctcggggcaacactctagggtttgggaaactgggtttttgcaattgcgtcgtgttgtgtagctccagattttc-------

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag------
|||| ||||| || ||| ||||||| |||||||||||||||||| | || |||||||||||||| ||||||||| ||||||| || ||||| ||||||||||||    |    |  |  || ||  | |||  |  |    ||  | ||  |  ||    ||| ||     |  |   |      |  | ||  ||||||      
TGGTGTTCATCGTGGACGTGCGTGCGGACAAGAAGAAGATCAAGCAGGCTGTGAAGAAAATGTACGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtgattgtc---ctcctctctgttgggatttcct--tcgaagtgccttagggttttcgaactgttgtctccttgtaa-ttacgtcgggtgcctgtttcagtcccgg

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagca--actatttaatgactattcagttttg-atagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag-
||||||||||||| ||  |||| || |||||||||||||||||||| || || ||||| ||||||||||||||| ||||||| || ||||| ||||||||||   ||  |        |   | ||  ||  |  |  |   | |  | | |  |  | | |      |  |||  ||   || ||    |||||    |  | 
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggtta-agcgtttcagtctcttcgcgattgaat---tgatatgttattcccacatgggt

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S46_72V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgac-----tattcagttttgat-agtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag
|||| |||||||| ||| |||| || |||||||||||||||||||| || || ||||||||||| ||||| ||  ||||||| || ||||| ||||||||||       | | |  |  |     | | |  |||| || | | | |||||  | ||   || || ||   |   |    | | | |  |  |||| |||      
TGGTCTTCATTGTGGACGTGCGCGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgtttctctcctctcccctttttccttttttaatgaatcagggtttgttgattttttgtttcttcggtggtggtctcgtttgc-gcaaattgcgtg-----

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ09823 (Selaginella moellendorffii), 5'ss of exon 2
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgat--agtaatggtttcataatgcattattgctgatgaa--------atttgatgggtggta-gtgaattccgttttcag----------------------------------------------------------
|||| ||||| |||||| | || ||||||||||||||||||||| | ||||||||||  ||||| || |||||| ||||||| || |||||  ||||||||| | |     ||   |   |  || ||  |  |  |||  ||  ||    || || |  | |   ||          ||||  ||| | ||  ||    |   ||||  |                                                          
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctagtg-tgtcttttcgattcacttcttcgtgtgtgggcttaccatttcttggttcgtttgtctgattgatttttggctttccagcttctcattgttttcattcatgggcttaccactttcgtttttttttccag

upper sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ15194 (Selaginella moellendorffii), 5'ss of exon 2
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcat-aatgcattattgctgatgaaatttgatgggtggtagtgaattccgttt--tcag---------------------------------------------------------------
|||| ||||| |||||| | || ||||||||||||||||||||| | ||||||||||  ||||| || |||||| ||||||| || |||||  ||||||||| | |     ||   |   |  || ||  |  |     | || |  | ||| || |  | |   ||     | |  | |  | |    ||  || |  |                                                                  
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctcgtttgtcttttcaattcacttcttcgtgtgtgggcttaccgtttcttggttcttttgtctgattgattttggctttctagcttctcattgttttcattcatgggcttaccactttcttcttttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193441954|gb|FK407821.1|FK407821
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAGAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|213613664|gb|DB963324.1|DB963324
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|10252957|gb|BE820723.1|BE820723
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|5605689|gb|AI899850.1|AI899850
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|209728121|gb|BW655356.1|BW655356
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|9821013|gb|BE556523.1|BE556523
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|22522979|gb|BU081790.1|BU081790
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192334633|gb|FK025866.1|FK025866
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|56173131|gb|CV997257.1|CV997257
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|7588837|gb|AW704624.1|AW704624
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|10235468|gb|BE804356.1|BE804356
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|208124170|gb|GD920984.1|GD920984
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGA
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGA
EST: gi|13240461|gb|BG359770.1|BG359770
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192332926|gb|FK025023.1|FK025023
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|193658730|gb|FK600777.1|FK600777
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAGAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag

- - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA