Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGTGTCTGAGAGTGGAAAACCTATCCTTGACTTGATTGTTCAACTTTGGAGCCAATCATTTGCTTCACATATTTTTGCCCTACTGTTTCACAAATGGgtatgtgagcttgtgtctacatttgtcttgttgctttcttgatgacgtttttcatgtgtgattgtatggtctttagtcactggttttgaattttaacatt...

Basic information

species Glycine max
transcript GLYMA11G15030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15030.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04350.t01 (Vitis vinifera), 5'ss of exon 3
GCGAGTGTCTGAGAGTGGAAAACCTATCCTTGACTTGATTGTTCAACTTTGGAGCCAATCATTTGCTTCACATATTTTTGCCCTACTGTTTCACAAATGGgtatgtgagcttgtgtcta------catttgtcttgttgctttcttgatgacgtttttcatgtgtgattgtatggtctttagtcactggttttgaattttaacatt
  | ||| |||||| ||||||| |||||||||| |||||||| ||  | |||||||| | |||||| || || ||||||||| | ||||| ||||||||||||||||| ||||  | ||        ||||  ||||  ||||  |   || ||||||| | | ||    | |  |  |  |    | ||  | || |||      
TAGGGTGCCTGAGAATGGAAAATCTATCCTTGATTTGATTGTCCAGTTATGGAGCCAGTTATTTGCATCTCACATTTTTGCCTTGCTGTTCCACAAATGGgtatgtgaacttgcatttagtaaactctttgatttgtgtctttggtatggaagtttttcct-tttggccatgtattgct--gcttgtagtgataaaattttct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901650|gb|BE610618.1|BE610618
EST:     GGAGCCAATCATTTGCTTCACATATTTTTGCCCTACTGTTTCACAAATGG                         TTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT
genomic: GGAGCCAATCATTTGCTTCACATATTTTTGCCCTACTGTTTCACAAATGGgtatgtgagc ... ctttttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT
EST: gi|17964327|gb|BM271064.1|BM271064
EST:     TTTTGCCCTACTGTTTCACAAATGG                         TTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT
genomic: TTTTGCCCTACTGTTTCACAAATGGgtatgtgagc ... ctttttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT