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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagtttttttttttttaatttgtgattttgctttgataggaacaacatgaaagtgatcagtgatgtttcctgttcaatttttgcag

Basic information

species Glycine max
transcript GLYMA11G14980.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14980.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g00910.t01 (Vitis vinifera), 5'ss of exon 3
CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagtttttttttttttaatttgtgattttgctttgatag-gaacaacatgaaagtgatcagtgatgtttcctgttcaatttttgcag
 || ||||| || || |||||| | |||| ||| ||| || | |||||||| || || ||  | |||| ||||||||| ||||||||||| || ||||||||||| |  | || || ||| | |  | |  | || |   |   ||    |||||| | |  |    || ||||  || |   |   
TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagttatagtgttctttattagagcatattttatgcttttgtgtaagggaaaagtgcttaaag----ttgctgtcaaactacag---

upper sequence: GLYMA11G14980.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 3
CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagtttttttttttttaatttgtgattttgctttgataggaacaacatgaaagtgatcagtgatgtttcctgttc----aatttttgcag
 || ||||||||||||||||| || ||||| || ||| ||||||| || || ||||| ||  |||||||||| || |||||  | ||||| |||||||||| ||| ||| |         |||| ||    |||||     || |   ||   ||    |  ||       ||||    |    || |||
TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAACAGTCCTCCAACAGTGAAGTTTACTTCAGAAGTGTGGCATCCCAATGgttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatcaacttggttcttgcatgaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298167627|gb|HO012890.1|HO012890
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|208089572|gb|GD886161.1|GD886161
EST:     CACCTCAGAGTATTATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: CACCTCAGAG-A-TATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298194743|gb|HO043215.1|HO043215
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|213587556|gb|DB969697.1|DB969697
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATC
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATC
EST: gi|14011884|gb|BG726806.1|BG726806
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298182929|gb|HO028142.1|HO028142
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298167833|gb|HO013096.1|HO013096
EST:     AAATAGTCCATCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTCGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|8286011|gb|BE023499.1|BE023499
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|208224042|gb|GE022585.1|GE022585
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298183716|gb|HO028929.1|HO028929
EST:     AAATAGTCTACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGTCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|208061404|gb|GD859230.1|GD859230
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298167168|gb|HO010607.1|HO010607
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGGTATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|16104747|gb|BI892487.1|BI892487
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|7284473|gb|AW597063.1|AW597063
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|213603235|gb|DB970406.1|DB970406
EST:     AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATG                         TATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagttttt ... atttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG