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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAAGAATTCCACAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCAAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaactttctatatttctatgtcattcattgacttcttccttgtaactcctactttgctgcatctatttctggaattattagccgtgtgctcata...

Basic information

species Glycine max
transcript GLYMA11G13330.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G13330.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 3
CCCGAAGAATTCCACAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCAAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtatt--ttaactttctatatttctatgtcattcattgacttcttccttgta--------actcctactttgctgcatctatttctggaattattagccgtgtgctcata
||| ||||  | |  || || || ||||||||||||||||||||||| |||||  ||||||||||||| |||| ||| || ||| |    || ||||||||||||  || | | | | ||  |  |  ||  |   || |   ||  |  |         |  | ||  |   || ||  || || |  |  ||  | |           
CCCAAAGACGTTCCGAAATCCACAATGGGTGCTAGAGCTACAGATTCAGCAAGGGTTATGAAGTTCACAAAGGAGCTATCCGGGCCAACTGTCATATTAGgtattgctttattgtttgtacattcacttctgtttctgtcccattgataatctaaggagcatacatatgtcaatgtatacatctcagatacaatggggcc----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298167430|gb|HO012693.1|HO012693
EST:     AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAG                         ACAAGTTGCGGGAATTAGCTTGGAGTGGTG
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTG
EST: gi|22525828|gb|BU084639.1|BU084639
EST:     AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAG                         ACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA
EST: gi|192333733|gb|FK025806.1|FK025806
EST:     AAGAATTATGAAGTTCACCAAG-TGCTTTCTGGGACG-TGGTTATATTAG                         ACAAGTTGCGGGAATTAGCTTGGAGTGGTGTT
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTT
EST: gi|31561508|gb|CD487346.1|CD487346
EST:     AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAG                         ACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA