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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggttttcctttgtcttttctatttcatagagatttgtggttgtttatagaatggctttgcagaattatgttagagttgttatgaatctcttttcaataatttgttcttgttgtaatttcatag

Basic information

species Glycine max
transcript GLYMA11G12610.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529501|gb|EH257635.1|EH257635
EST:     TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
genomic: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
EST: gi|193355637|gb|FK323414.1|FK323414
EST:     TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
genomic: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
EST: gi|208245126|gb|GE039896.1|GE039896
EST:     TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
genomic: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA