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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttagttactccctccaacttcattcctattcgttagttaaatattattgctccataccaaattaatttactagtctactgttggaatatgctttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacag

Basic information

species Glycine max
transcript GLYMA11G12450.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12450.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 3
TTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttagttactccctccaacttcattcctattcgttagttaaatattattgctccataccaaattaatttactagtctactgttggaatatgctttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacag
| ||||||||||||| ||||| ||||||||  |  ||||||| || |||||||| |||||||| || || ||||| || ||||||||||| ||||| |||||    |   |  |   ||||  || | ||| || |  |     ||| || | || ||  ||||||      | |||| | |     | | | | |  |   | | |||                                                
TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagg---gccacagactca-tcaatcttaatacacaaaatatagatacacat-atatctccatgttgc-tgaattcagt--ctaattatcgaaccactttgtaaacag----------------------------------------------

upper sequence: GLYMA11G12450.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ21812 (Selaginella moellendorffii), 5'ss of exon 3
TTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttagttactccctccaacttcattcctattcgttagttaaatattattgctccataccaaattaatttactagtctactgttggaatatgctttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacag
                               ||| | || ||||| |  |||||||||||||| |||||||| || ||||| || || || |||||||||||     |     |  |  |   ||  | |  |||       |||   |  | |  |                                                                                                    
-------------------------------GTTACTGGAAAAGCCGTGATGCTTGATGAAATCATTAACTACGTCCAGTCGCTCCAGCGTCAAGTTGAGgtacagctcgtcgaagtgttgattctcaatgtatttacgcgagttttctttaaaccag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G12450.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ34195 (Selaginella moellendorffii), 5'ss of exon 5
TTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttagttactccctccaacttcattcctattcgttagttaaatattattgctccataccaaattaatttactagtctactgttggaatatgctttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacag
                               ||| | || ||||| |  |||||||||||||| |||||||| || ||||| || || || |||||||||||     |     |  |  |   ||  | |  |||       |||   |  | |  |                                                                                                    
-------------------------------GTTACTGGAAAAGCCGTGATGCTTGATGAAATCATTAACTACGTCCAGTCGCTCCAGCGTCAAGTTGAGgtacagctcgtcgaagtgttgattctcagtgtatttacgcgagttttctttaaaccag---------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13787686|gb|BG650278.1|BG650278
EST:     GCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: GCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
EST: gi|7283565|gb|AW596171.1|AW596171
EST:     TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
EST: gi|7284072|gb|AW596671.1|AW596671
EST:     TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
EST: gi|22523801|gb|BU082612.1|BU082612
EST:     TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT