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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagtcattctttttgcttttctttttttaaaataatttcttgccaagataagattcaatacaatttgaacaaccttcttccaatctgttgtttt...

Basic information

species Glycine max
transcript GLYMA11G11960.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11960.3 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34650.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagtcattctttttgcttttctttttttaaaataatttcttgccaagataagattcaatacaatttgaacaaccttcttccaatctgttgtttt
||||||| || ||| ||  |   ||  |||| || ||||| |||||||| || ||||||||||| || ||| |||| ||||| ||||||||| ||| |             ||||||   | ||||      ||   |   | ||    |||  |  || || |  |  |||| | |||| | | |    
AGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaataagaaga---gacttttcacatcttaa----cctttcagatgaaattcttttct-tttaacttaattactcttcattcaattt-tag----

upper sequence: GLYMA11G11960.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 3
AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgag-----tgagtcattctttttgcttttctttttttaaaataatt-tcttgccaagataagattcaatacaatttgaacaaccttcttccaatctgttgtttt
|||||||||| |||||    ||||||||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| ||||| ||| ||||||||     |||    || |    |  ||| ||| | |     ||   | || |  |  |  | ||   |    ||  |  |||     |  |   |  ||||||
AGGATGATACAAGCATTCGTACAGATGTCAAAGTGCCTATTCTGATAGCTTTTCATCGTCATATATATGACCGTGACTGGCATTTTGCATgtgaggatcatgaactcttttcaccgtatttgtttctcttttgcaaccatatttcttatttgtggtttc-tttggttccacaaac-----tggagaatactgtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193389048|gb|FK354843.1|FK354843
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|14010995|gb|BG725917.1|BG725917
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|10709996|gb|BF009720.1|BF009720
EST:     ACTGATAGCCTTTCACCGTCATATGTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAA
EST: gi|208160470|gb|GD958766.1|GD958766
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTCTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|209722769|gb|BW682867.1|BW682867
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|27446333|gb|CA953456.1|CA953456
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|20813646|gb|BQ298124.1|BQ298124
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|209725283|gb|BW672760.1|BW672760
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|193385511|gb|FK350747.1|FK350747
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|193499460|gb|FK461255.1|FK461255
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|213595316|gb|DB968448.1|DB968448
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|209714966|gb|BW650812.1|BW650812
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA