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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTACGATGTACGTGCACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtctttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat...

Basic information

species Glycine max
transcript GLYMA11G11670.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G20530.2 (Arabidopsis thaliana), 5'ss of exon 4
ACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTACGATGTACGTGCACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtctttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacag---gttattcat--------
 ||  |||||||||| |||||||| |||||  | ||||| || || ||||||   ||| || |||| ||||| ||||| ||||||||||||||||| ||||||   |  ||  |||   |  ||    | || ||   ||  | | | |  ||  || |  | |  |      |   |     | |    |   | |||| |         
TCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgcttcatttcatcacttctaatactaatgggtataatcaggtcgtgtggttttgtcgtgtgaactacatgataagcttatgttgtgtggtatttaaacattcag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 3
ACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTACGATGTACGTGCACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtc-tttttgtttgtcctatttc---ttttcttattcttaagacctgat-attgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat-------------
|||  |||||||||||||||| || ||||| || ||||| || || ||||| || ||| |  | || ||||||||||| || ||||||||||| || ||||||      || |  |  ||| ||||    |  | || || |    |  |  | | ||     |  ||   ||         |||   | ||     || |   |             
ACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCAGATGgtactctgcttctactcctcccattttcagtcattttgttttgtgaatttagtgaatgtgaagtcgttcgcttcaacatcataagctcttaagttttttgtggttttaaaactttcag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 4
ACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTACGATGTACGTGCACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtctttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat-----
 ||  | ||||| || ||||| || ||||| || ||||| ||||| ||||||||||||||| | || |||||||| |||||||||||||| ||||| |||||||   | |||  | || ||  |  | |    | | ||  |   | || |||| |      ||     |||  || |  ||| || |   |  | |        
TCACCTGATGATCCCATGGTTTGAAAGGCCAGTTATCTATGATGTCCGTGCACGCCCTCATCTGGTGGAGAGTACTTCAGGGAGCCGTGACCTCCAGATGgtaatattgttttctagttct--tgttatagaaaatgttgtgg--ttatgttgctgatcatgtgttcaggtga-tgaagtgagacatagctgcaactttcagact

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S215_63V6.1 (Physcomitrella patens), 5'ss of exon 2
ACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTACGATGTACGTGCACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtctttttgtt--tgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat-----------------------------------------------------------------------------------
 ||| | |||||||| |||||||| |||||||| ||||||||||| || ||||| ||| || | || ||||| || ||||| ||  | ||||| || ||||||| |     ||||  | || |  ||  | | |  |    ||    |  ||      ||||||   |  ||  |      ||| |    |  ||| ||                                                                                      
GCATTTCATGATTCCCTGGTTCGACAGGCCTGTCATCTACGATGTCCGAGCACGACCTAATATCGTTGAGAGCACCTCAGGAAGTAGGGATCTTCAGATGgtaa-ttgagatgttgatatcgtgattgatgtttgctggcaaatttttattagaaatatatgctaagaagtggagactttcggaatt--gcccgttgtttgcaggaaacgggcttaagaacgtatggtgcaatttgcgaggggtatggtgttattgaactcacttttctgtttcttggtttgtag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S41_59V6.1 (Physcomitrella patens), 5'ss of exon 2
ACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTACGATGTACGTGCACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtctttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat-----------------------------------------------------------------------------------------------------
 ||| |||||||||| |||||||| ||||||||||| || ||||| |||||||| ||| |  | || ||||| || || |||||  | ||||| ||||||||| ||    | ||      ||  | |  ||  ||       |  |  | |   |   |  ||   |||| |      ||   ||   || ||  |||||                                                                                                     
GCATTTTATGATTCCCTGGTTCGACAGGCCTGTGATATATGATGTCCGTGCACGACCTAACATTGTCGAGAGCACGTCGGGGAGTAGGGATCTTCAAATGgtacgttgaatagtgatatgtacctgtggtcgaat----ggcaattcctttcagacagtttttatgtttgagatgaatagctctctttcaagtagttcatggaatcgtgtgtttttgttgaaggggtttttgtcggggatggtgttgtttgtttaggaattactgagattacgttttaccctgctgctgcaacgttaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330517|gb|GR841782.1|GR841782
EST:     CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|15287791|gb|BI471682.1|BI471682
EST:     CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|213608413|gb|DB972671.1|DB972671
EST:     CACGTCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGAACAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|17962874|gb|BM269622.1|BM269622
EST:     CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|23735502|gb|BU766034.1|BU766034
EST:     CATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA