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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcattgttcttatgtttcatgttcctttgtctgcaacttaattgttttaagaatataaattttcattttgcatgaaccaagggtcggcttcttta...

Basic information

species Glycine max
transcript GLYMA11G11370.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409712|gb|EV279520.1|EV279520
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|192301026|gb|FG987981.1|FG987981
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|163921467|gb|EH038979.1|EH038979
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|120533708|gb|EH261841.1|EH261841
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|213597314|gb|DB964387.1|DB964387
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAANACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|151406317|gb|EV276132.1|EV276132
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|298170662|gb|HO019286.1|HO019286
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|192306070|gb|FG993660.1|FG993660
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: gi|19053954|gb|BM732621.1|BM732621
EST:     GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG                         AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcattgttcttatgtttcatgttcctttgtctgcaacttaattgttttaagaatataaattttcattttgcatgaaccaagggtcggcttcttta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtcgg