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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGATACATTCAATGCCACAATTGTTTCGCCTGTATATTATGTAATGTTCACCACTCTTACTATTATTGCCACTGCAATAATgtttaaggtatgataatatactcattttttttattccttaggtgatatctcaaacttttctttttgctgaacaataggatatgacaaacttgactgtttactttcag

Basic information

species Glycine max
transcript GLYMA11G11230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11230.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 7
GCTCTGGATACATTCAATGCCACAATTGTTTCGCCTGTATATTATGTAATGTTCACCACTCTTACTATTATTGCCACTGCAATAATgtttaaggtatgataatatactcattttttt-----tattccttaggtgatatc-tcaaacttttctttttgctgaacaataggatatgacaaacttgactgtttactttcag-------
|| ||||||||||| |||||  |||||||||| ||  | |||||||| |||||||| ||||| ||||| | ||| | |||||||||||| ||||||   |  |  |   ||||  ||     | || || | |    ||  ||    | || |  || |  |  ||||       | |||  | | | ||| | |           
GCGCTGGATACATTTAATGCAGCAATTGTTTCTCCAATTTATTATGTCATGTTCACAACTCTGACTATAAGTGCAAGTGCAATAATGTTCAAGgtagattgctgaatctatttacttggtgttgtttctgaagctgcattatcgggttcttatgattac-aagaaataatgagc-ataaatcttattctttgcatgtgctctgcag