Sequence
atgc intronic sequence ATGC exonic sequenceTTTGACAAATCCTAAAGCTGGTTATTACATCAATCGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAGgtgaggtgaagtgaattatccatttatttaactatgtctgttgttgggggcatgaactagagttaaagcttgtcaatgccataaggattcaaatatttaacaccttgttgtttatttaaacttag
Basic information
species | Glycine max |
transcript | GLYMA11G10540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G28700.2 (Arabidopsis thaliana), 5'ss of exon 3
TTTGACAAATCCTAAAGCTGGTTATTACATCAATCGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAGgtgaggtgaagtgaattatccatttatttaactatgtctgttgttgggggcatgaactagagttaaagct-tgtcaatgccataaggattcaaatatttaacaccttgttgtttatttaaacttag
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TTTGACTAATCCTAAAGCAGGATTCTATATGAATCGTGATGTTTTTGGAGCTCAAGGTGATTTCATTACTTCTCCAGAAGTTAGCCAAATGTTCGGCGAGgtga------------------tttacttggcgtttgttgatttgagagttatgcatttgtgttttggttctatgtttgagcttgagattgaagt-tttgttactttgt-gt---tgtgatcttag
upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 3
TTTGACAAATCCTAAAGCTGGTTATTACATCAATCGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAGgtgaggtga-----agtgaattatccatt----tatttaactatg-tctgttgt-tgggggcatgaactagagttaaagcttgtcaatgccataaggattcaaatatttaacaccttgttgttt--atttaaacttag-------------------------------------------------------
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TTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagta-agggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323613|gb|FK017479.1|FK017479EST: CAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAG ATGGTTGGTGTCTGGGTGATGTGTCTTTGGGAGCAAATGGGCCAACCACAA
genomic: CAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAGgtgaggtgaa ... ttaaacttagATGGTTGGTGTCTGGGTGATGTGTCTTTGGGAGCAAATGGGCCAACCACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGACAAATCCTAAAGCTGGTTATTACATCAATCGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAGgtgaggtgaagtgaattatccatttatttaactatgtctgttgttgggggcatgaactagagttaaagcttgtcaatgccataaggattcaaatatttaacaccttgttgtttatttaaacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG