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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctctggatgagtgaataatatcaatgtctgcttgcctgcttgtatggttcataatattttttttttatgcataccattcgagttatatagatt...

Basic information

species Glycine max
transcript GLYMA11G09890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09890.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G04590.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctctgga-----tgagtgaataatatcaatgtctg--cttgcctgcttg-tatggttcataatattttttttttat-gcataccattcgagttatatagatt
||| |||  ||| ||||||||||||||||| || || ||||| |||| ||||| | | ||||| ||||| || || |||||  | || ||||||||||||||    |  ||  |     |  |  |||    ||| | || |  |||    || ||   |  |  |||| || || |  |  | |  |||   | |             
GTTCAGAGATGTTGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttactaaaacccttttgaaaattgcgtcactttcagaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatag-------------

upper sequence: GLYMA11G09890.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 3
GTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctctggatgagtgaataatatcaatgtctgcttgcctgcttgt---atggttcataatattttttttttatgcataccattcgagttatatagatt
||| |||||||| || |||||||| ||||| ||||||||||| ||| | | ||  || ||||| |||||||||||||||||| | || |||||||| |||||| || ||||  ||| |    ||  || | | | || |   |  | | |   |   |   | ||   |||  |||     |    ||  | | || ||||  
GTTCAGAAGTGTTGTCGAGCAATACTATGGAAAGAAATTTGAGCCTATACATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAGgtttgtcctcttcatgtggatgtacaattactatgtgatctgccacctatcaaaaaatctgtgatggctttaattttgttttggggttttaataat-taga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193513428|gb|FK471536.1|FK471536
EST:     TTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: TTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
EST: gi|120533624|gb|EH261757.1|EH261757
EST:     GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
EST: gi|8283363|gb|BE020924.1|BE020924
EST:     GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
EST: gi|10232272|gb|BE801160.1|BE801160
EST:     GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
EST: gi|208067279|gb|GD862245.1|GD862245
EST:     GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
EST: gi|207797350|gb|GD769874.1|GD769874
EST:     GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
EST: gi|254326624|gb|GR841216.1|GR841216
EST:     GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAG                         GGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT
genomic: GTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctc ... catcttccagGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGT