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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGACTGGAAGCAGTATTGAAAATGCCTTTGGAGTGCTTAATGCATTGGGTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaacataatattatgtgtttattttcctattacccagttgaattttatgaaattagtgaaaatttgaatgttgaataataagaacaaagaacat...

Basic information

species Glycine max
transcript GLYMA11G08770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08770.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0302g00020.t01 (Vitis vinifera), 5'ss of exon 3
-AAGGACTGGAAGCAGTATTGAAAATGCCTTTGGAGTGCTTAATGCATTGGGTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaacat--------aatattatgtgtttattttcctattacccagttgaattttatgaaat--tagtgaaaatttgaatgttgaataataagaacaaagaacat
 || ||  || | |  ||||||| ||   ||| | || || || ||| | || |||||||| ||||||||||| ||||||||||| ||||| || |||||||||   |  |          |||   |    ||| |  ||   ||  | |  | |  || |||| |   |  |  | | ||     ||| ||| |  |            
TAAAGAA-GGCACCGATATTGAACATATTTTTAGTGTACTCAACGCACTTGGGATCATTGCTTTTGCTTTCAGAGGCCACAATCTTATCCTCGAGATTCAGgtacctgttctctccttccaaatgcaacagattt-taatctagttttctaaataagattcatgataccctcttagataattattccttggatagtttggga---------

upper sequence: GLYMA11G08770.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g03530.t01 (Vitis vinifera), 5'ss of exon 3
AAGGACTGGAAGCAGTATTGAAAATGCCTTTGGAGTGCTTAATGCATTGGGTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaacataatattatgtgtttatt-ttcctatt----acccagttgaattttatgaaattagtgaaaatttgaatgttgaataataagaacaaagaacat
   | |  |       ||||  |     ||||  ||  | |||||| | || |||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||  ||    |||   |   || ||| ||| | ||    |     || | |||| |  | ||  || |  |||| ||  |   | | | |    || |    
TTCGTCCAGCTCAGAAATTGGTAGAATTTTTGATGTTTTGAATGCACTTGGGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaatcacatagcttaccttcattcttcttgttctgtattttttttatttttttttatttcttgta--tttggataatatttcaaatggttgaaaac---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401181|gb|EV270995.1|EV270995
EST:     GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAG                         TCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
genomic: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaac ... ttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
EST: gi|209719028|gb|BW674842.1|BW674842
EST:     GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAG                         TCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
genomic: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaac ... ttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
EST: gi|213604363|gb|DB970595.1|DB970595
EST:     GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAG                         TCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
genomic: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaac ... ttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA