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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTGGAGACGTTCTTTGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTgtaagtggcaagtgttgcggaatccgtttttcttctcatattatttgttgattatgcgtcgttcatgataggaaacttttgccgactgttctattaaaaa...

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 3
GGAAGCTGGAGACGTTCTTTGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTgtaagtggcaagtgttgcggaatccgtttttcttctcatattatttgttgattatgcgtcgttcatgataggaaacttttgccgactg-ttctattaaaaa
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GGAAGCTGGAGATGTTCTTCAAGGAAGAGGCAAGGCGCGGTTGCTCTATTATCGATCTCTATGAACTTGTGCAACATGCAGGCAACATATTGCCTAGACTgtaagtgagaaatgggatgggttcaaccccttgtttt-tatttttgattgtatatggggtgtcttttaattttcttggttatgaattgattttgccacccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193342684|gb|FK306510.1|FK306510
EST:     ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATT                         GTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
genomic: ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTgtaagtggca ... ttgcaatcagGTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
EST: gi|254342605|gb|GR858767.1|GR858767
EST:     ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATT                         GTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
genomic: ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTgtaagtggca ... ttgcaatcagGTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
EST: gi|15285344|gb|BI469235.1|BI469235
EST:     ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATT                         GTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
genomic: ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTgtaagtggca ... ttgcaatcagGTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
EST: gi|120531471|gb|EH259604.1|EH259604
EST:     ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATT                         GTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC
genomic: ATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTgtaagtggca ... ttgcaatcagGTACCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCC