1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGGAAAATACAGTGGGAGTTCTCACAATGGCTGGGAAAGGCGTTCGTGTTTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattttacacatttttttgaatgttttacctttatttttatgtgcagatgttctagatttattatttggattatgctctgttggaaaaaccatta...
species | Glycine max |
transcript | GLYMA11G08290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|14258768|gb|BG881676.1|BG881676
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|213600544|gb|DB960092.1|DB960092
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|193656228|gb|FK603316.1|FK603316
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|213605510|gb|DB970667.1|DB970667
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|298183378|gb|HO028591.1|HO028591
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|298165035|gb|HO011084.1|HO011084
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|193477480|gb|FK443561.1|FK443561
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|213596699|gb|DB964046.1|DB964046
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|4283205|gb|AI440627.1|AI440627
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|208114435|gb|GD908518.1|GD908518
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCTGGTGGCAEST: gi|193384865|gb|FK353223.1|FK353223
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCA
EST: TGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|208274474|gb|GE070164.1|GE070164
genomic: TGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGEST: gi|298162986|gb|HO011719.1|HO011719
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAG
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|209715414|gb|BW684698.1|BW684698
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|193451300|gb|FK420548.1|FK420548
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|193554171|gb|FK511284.1|FK511284
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|151397896|gb|EV267769.1|EV267769
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACEST: gi|208253497|gb|GE054285.1|GE054285
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCAC
EST: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATG GACTAGATATAGGTGGTGAG
genomic: TTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattt ... cccaatttagGACTAGATATAGGTGGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGAAAATACAGTGGGAGTTCTCACAATGGCTGGGAAAGGCGTTCGTGTTTTGGTTACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGgtaagtattttacacatttttttgaatgttttacctttatttttatgtgcagatgttctagatttattatttggattatgctctgttggaaaaaccatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaac