Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCCATAATGCTTTTGATGATGAATCATACGTGTACATAGTTATGGAgtaagttatttttattttttagtctcttttctatactgcttcaatgtgttaatatgattttgagcatcacttaactgcaatgtactccggatatatcttt...

Basic information

species Glycine max
transcript GLYMA11G08180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 2
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCCATAATGCTTTTGATGATGAATCATACGTGTACATAGTTATGGAgtaagttatttttattttttagtctcttttctatactgcttcaatgtgttaatatgattttgagcatcacttaactgcaatgtactccgga-tatatcttt---
|| ||||||| |||||  | |||||||||| ||||||||| ||| | ||||| ||| | ||||| ||||| ||||| ||||| || || || || |||||||||||  ||   || |  |||  ||| ||  ||   | | ||   ||||| |     | |   |  |    |  | || | || | |    || ||| |    
AGAGAGAAGTGAAGATTCTTAAAGAACTTAAAGGCCATGAGAATATTGTTCACTTCTACAATGCGTTTGAAGATGACTCATATGTATATATTGTGATGGAgtaagtagtt---atatactagcttctcttacatttcg-tgcacaatgttatttgctatatacactccttgcacttacattttatttctacctaaatcctaata

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G053868_T02 (Zea mays), 5'ss of exon 2
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCCATAATGCTTTTGATGATGAATCATACGTGTACATAGTTATGGAgtaagttatttttattttttagtctcttttctatactgcttcaatgtgttaatatgattttgagcatcacttaactgcaatgtactccggatatatcttt----
|  ||||||| |||||  | |||| ||||| ||| ||| | ||| | ||||| ||| | ||||| ||||| ||||| |||||||||||||| || |||||||||||             |  ||    |  || |     || || |  |  ||||| |||   |   |   |  |  ||  |   |   || |||| |     
AAAGAGAAGTGAAGATTCTTAAAGCACTTAAAGGACATCAGAATATTGTTCACTTCTACAATGCATTTGAGGATGATTCATACGTGTACATTGTGATGGAgtaagtaggcccatacacctgttcctgctaatagagcatatcgattt--tgctatgacttttttccctaa--agttttaacatgaacaatatctatcctgttta

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 2
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCCATAATGCTTTTGATGATGAATCATACGTGTACATAGTTATGGAgtaagttatttttattttttagtctcttttctatactgcttcaatgtgttaatatgattttgagcatcacttaactgca--atgtactccggatatatcttt---
||||||| ||||| |||||  |||  ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||||||   | ||||    ||| |  ||  || ||| | |  |||  || | |||| ||  | ||    ||| || | |||    ||| ||    || ||||| |   
AGCGAGAGGTCAAAATATTAGAAGCGCTTACCGGCCATGAGAATGTGGTTCAGTTCCATAATGCATTTGAGGATGATTCTTATGTCTATATAGTTATGGAgta---tgttttgtgatttgaagcttcttactaaaatcgttctttg-gctaat-tgtctgtgccattcatttgattgctttgtgtgctattaatttatctattct