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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAAGgtagatgaaatatgaacatgtcaatgcattaccttgtctttctcaaaaaccatttttttgatttggttatacctctttatag

Basic information

species Glycine max
transcript GLYMA11G07950.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07950.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 5'ss of exon 5
AAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAAGgtaga--tga-aatatgaa------catgtcaat------gcattaccttgtcttt-ctcaaaaaccatt--tttttgatttggttatac-ctctttatag
 ||  | ||||||||||| |||||||| ||||| ||||||||||| |||| ||| || || || ||  |  |||| || || | | | |||||||| |||||| |  | | ||||| |       |||   |||      ||||||  |    ||   |||  |||  |    |||| |     ||||    | |||  ||
TAGTGTCTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGATTGGTATTACGGATTATGCCTTGGCTGATATATATGATTACATTGAGAAGgtaaagttaacaatatcagagtcttcatagtaatcttaccgcattatttccaattcattcagtaactgtcgccttttaaaaaaattatttgttttttgcag

upper sequence: GLYMA11G07950.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 3
AAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAAGgtagatgaaatatgaacatgtcaatgcattaccttgtcttt--ctcaaaaaccatttttttgatttggttatacc--tctttatag--------
||| |||||||| |||||||||||||| ||||| ||||||| ||| ||||| || || ||||| || ||  ||||||| || | | || | || || | ||||    ||| |  |  || |||   | || |||    ||    || | ||       |||  |||| | | |    |  |||||         
AAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAGGgtaatcaaaacaccactatatcatcccctttcctctctttcagttccataatttcccatttcctttgatgaaaaaaattgttatacatttgtag