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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtattttttccccattcatcttgcttccaatgtagagtccttatttggagaaagcttgaggtgatgcgtttcagttagtgaagtttttgtttaga...

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g49990.2 (Oryza sativa), 5'ss of exon 3
GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtattttttccccattcatcttgcttccaatgtagagtcctta---tttggagaaagcttgag-gtgatgcgtttcagttagtgaagtttttgtttaga
|| || || ||||||||| |||| || ||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||   || | | |    ||  |||    | |    | |    ||||     |  ||  | | ||   |  | || ||  | | || |||       |||| |  
GAGCCTCTAAAGTTGGATTTTGTCATAAGCTTTCCTGACCATGGGTTCCACCTGCGCTTCGATCCTTGGTCACAGgtaa-gtttgtatggtacaaacatgaaacatgtgctttgatttcctggtagtccggttacatctcaggcatcattcggct-aatttgtgcctaacatgttaa--

upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 3
GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtattttttccccattcatcttgcttccaatgtagagtccttatttggagaaagcttgaggtgatgcgtttcagttagtgaagtttttgtttaga---------------------------------------------------------------------------------------------
|| ||  ||||  |||||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||||     | || || || |   ||  | ||    |  ||  |   ||   ||  | | | || |    |  | |  | | |    ||  ||||||||  |                                                                                             
GATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgta---caattctttcctag--atgatactgtggacctatggcttttgcatgt-gtatgattaaaccaa--cttcactgctttacaaacttttgttttcaactattcaagagtggaaagcaatttagtgtatcgctatataactagttttaactggaataaacttagcttttgttcttccaatttgtttgcag

upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 3
GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtattttttccccattcatcttgcttccaatgtagagtccttatttggagaaagcttgag--gtgatgcgtttcagttagtgaagtttttgtttaga
|| ||  | ||| ||||| | || ||||||||||| |||||||| || |||||||| |||||||| ||||| |||||  | | | |     |   |  | ||    || |   | ||| |  |     | |    |   |     |    ||| | ||| |   | |  |  |    
GAGCCATTAAAGCTGGATATAGTCATTAGCTTTCCAGATCATGGTTTTCATCTTCGTTTTGATCCTTGGTCGCAGgtaatttttgtgcatactgctatttttttacccgaaacaaagtgcacacacccacacttttcacgcaactaaaaatttaaattacttttggtactaatat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426508|gb|CA938028.1|CA938028
EST:     TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG                         AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
genomic: TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtatt ... gctattttagAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG                         AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
genomic: TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtatt ... gctattttagAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG                         AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
genomic: TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtatt ... gctattttagAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
EST: gi|7233548|gb|AW568953.1|AW568953
EST:     TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG                         AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
genomic: TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtatt ... gctattttagAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
EST: gi|193569709|gb|FK523562.1|FK523562
EST:     TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG                         AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
genomic: TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtatt ... gctattttagAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
EST: gi|193559721|gb|FK515010.1|FK515010
EST:     TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG                         AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT
genomic: TTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGgtgttgtatt ... gctattttagAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTAT