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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagcttttactctattgtaacttaatcgcaaatcttaggaaaaactttatcagaagatattttgcaacatcatggccatcttagttttggggcttatt...

Basic information

species Glycine max
transcript GLYMA11G07530.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07530.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g47600.1 (Oryza sativa), 5'ss of exon 3
GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagcttttactctattgtaacttaatcgcaaatcttaggaaaaactttatcagaaga-tattttgcaacatcatggccatcttagttttggggcttatt--
| |||||||||||||||||||||||||||||||| ||   || || |   |  |      | ||  |  |    | |||||  |  || | |    |    || |  || || |||||  ||    | |   
GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac-ctttactactaaatctctaaatatgatttgtgtcattttatgggttgaatgtcaatctggctctttaccttcatagtt--ggaatctctcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390382|gb|CA853577.1|CA853577
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|12689521|gb|BG155857.1|BG155857
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|10235681|gb|BE804569.1|BE804569
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|192316515|gb|FK009312.1|FK009312
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|17022265|gb|BM093299.1|BM093299
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|15661703|gb|BI699074.1|BI699074
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|11273956|gb|BF324342.1|BF324342
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|19452855|gb|BM954265.1|BM954265
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|192333273|gb|FK026154.1|FK026154
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|15814337|gb|BI786612.1|BI786612
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|6481455|gb|AW200726.1|AW200726
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: gi|15203687|gb|BI426455.1|BI426455
EST:     GGCCAGGAGCTCCAGCAGTTTTCAACTGT                         GTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagctttt ... tcaatggcagGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagcttttactctattgtaacttaatcgcaaatcttaggaaaaactttatcagaagatattttgcaacatcatggccatcttagttttggggcttatt

- -  GGAGCT