Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacacttcaacactaaacaaccaattaatatagtttttttattgttccgttgggaaatatgctttttttggggttgtaactgttgtttgcttttcaacag

Basic information

species Glycine max
transcript GLYMA11G05830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05830.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G050861_T01 (Zea mays), 5'ss of exon 3
ACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacacttcaacactaaacaaccaattaatatagtttttttattgtt-ccgttgggaaatatgctttttttggggttgtaactgttgtttgcttttcaacag
| ||||| || || ||||| ||||| |||||||||||||| |||   || ||||| || ||||| ||  ||||||| |||||||||||||| || ||||||||  |||||         |  ||    || | | ||||||||  |||  |  |  |   | ||  ||||       |||| |                     
ATAATGGAAACTTGGAGCAATGGCTCCATGGGGATGTTGGCCCTGTGAGCCCTCTTACATGGGATATCAGAATGAAGATTATTCTGGGAACAGCAAAAGGgtatgcactttgctgacttattactg--tagtcttgtttttttgctgtcactatctgcttacattattttacctaa-ttgtgaag-------------------

upper sequence: GLYMA11G05830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 3
ACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacacttcaacactaaacaaccaattaatatagtt--tttttat-tgttccgttgggaaatatgctttttttggggttgtaactgttgtttgcttttcaacag
| ||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| ||||||||||| || || |||||||| || |||||||  | | |||||  | ||     | |   |    |||     |||| ||||  ||||     | || |       |   || || ||  |               
ATAATGGGAATTTGGAGCAGTGGCTTCATGGTGATGTAGGGCCTCGAAGTCCTCTTACTTGGGAGATTCGAATGAATATAATCCTGGGAACTGCAAAAGGgt--ataattcaaatcaaattgggctacctaagccgttaccccttatctgttgtgttgctctgt-tgatcagaactgaactgaaaatgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481467|gb|BG510810.1|BG510810
EST:     CCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGG                         ATTAACTTATCTTCACGAGGGGTTAGAACCAAAAGTTGTTCACCGTGATAT
genomic: CCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacactt ... ttttcaacagATTAACTTATCTTCACGAGGGGTTAGAACCAAAAGTTGTTCACCGTGATAT