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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAAgtaatattattaatccctaatataatatcatttcattcgaatacatttgttgtgtcagatttctctttgctttaaattctctgattcgcgttgaatagtt...

Basic information

species Glycine max
transcript GLYMA11G05560.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05560.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G163409_T02 (Zea mays), 5'ss of exon 3
AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAAgtaatattattaatccctaatataatatcatttcattcgaatacatttgttgtgtcagatttctctttgctttaa-attctctgattcgcgttgaatagtt--------------------------------------------------------------------------
|||| | ||||||  | ||||||||||| || || || || ||||||||||| |||||||||||||| || ||||||||| ||   ||| |   |  || |||||   | | | |  |    ||| ||  ||  | |  |   ||  |   |  |      |  ||  |   ||| ||  |  | ||  ||    | |  |                                                                          
AGGTGAACAAGCTTATCAAAGGAAGGCCCCTTGACAATCTGGAGTTCATGCAGTGGATGAAACGATATTGTGATTCTGTCAATGGTGGCTTCATGAGCAGgtaat--cactgacctgtttactaaaatt-ttagactgtagctcagataaggctttgagcattcctcagtagtaatatatttcgtttgtcgccacacaactataagcaaaccgtattaaaagaacatttctgaatgtttacatttcattgtcctgttttttttttacgtacacag

upper sequence: GLYMA11G05560.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0129g01080.t01 (Vitis vinifera), 5'ss of exon 3
AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAAgtaatattattaatccctaatataatatcatttcattcgaatacatttgttgtgtcagatttctctttgctttaaattctc--tgattcgcgttgaatagtt----
|||| |||||||| ||||||||||| || || ||||| || ||||||||||||||||||||  ||||||| || || ||  ||   ||||||    ||| |||||    |  | || | || |  | |  ||   ||| | | ||||  || | | ||||  | |||   ||    |||||  ||  | |    |||| |||    
AGGTAAGCAAGCTTGTGAAAGGAAGACCTCTTGATAATCTGGAGTTCATGCAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaat----tgcaaccatgatttc-tctttttatgttccatttcattcattct-ttagatgccccttcatttctttttctcattgggttgttcagaattgtttgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193682130|gb|FK621268.1|FK621268
EST:     CAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAG                         TTATAATCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAAgtaatattat ... gaatttttagTTATAATCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACGAG
EST: gi|193712643|gb|FK650968.1|FK650968
EST:     CAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAG                         TTATTAAATCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAAgtaatattat ... gaatttttagTTAT-AA-TCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACG
EST: gi|151397172|gb|EV267045.1|EV267045
EST:     CAATGGATGAAACGATACTGCGATTCTGTCGATTTCGGCCTTCAGTACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAAgtaatattat ... gaatttttagTTATAATCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACGAG