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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgatccttcaatctcctgtattatacttggtactaccattctttatgtcctctccataatcaacatattgtttttccttaaacaaaattggagt...

Basic information

species Glycine max
transcript GLYMA11G05340.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g10940.1 (Oryza sativa), 5'ss of exon 3
CAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgatccttcaatctcctgtattatacttggtactaccattctttatgtcctctcc-ataatcaacata-ttgtttttccttaaacaaaattggagt----
 |||||||||||||| ||||| ||||| |||||||| |||||| |||||||||| ||||| || ||||| || || |  ||||| ||||| || |||||||||        ||||  | |    | |  |  || |||  |   ||    || ||  |||   | || || ||| ||||   | |||       ||||        
AAGTTTGATATTTGAATATGTAAACAGCACAGATTTCAAAGTTCTGTATCCAACATTGACAGACTATGATATTCGATTCTACATTTATGAACTTCTTAAGgtagcg-----cttctgtttta-atttagtcattagtagaagtgttgaaaatttcagctcttgtgatgaatatagttgtcaatacttgggtctgattgttcctatc

upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0129g00410.t01 (Vitis vinifera), 5'ss of exon 3
CAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgatccttcaatctcctgtat-tatacttggtactaccattctttatgtcctctccataatca-acatattgtttttccttaaacaaaattggagt-
 || ||||||||||||||||| |||||||||||||| ||||||||||| || ||  |||| ||||||||||||||||| |||||||||||||| || |||||||| |   | ||  || |  |  |   |||  |  |  | || |||| | | || |||| |    || | ||  ||    | ||| |      |   ||| 
TAGCTTGATATTTGAGTATGTGAACAGTACAGATTTCAAAGTTTTGTACCCCACTCTGACCGATTATGACATACGCTACTACATATATGAGCTTCTCAAGgtaatttatactttagatttattagagacataactttt-ttgcctttctctct-tcatctcaacttgcagaaattatgcccattcttga-tgttttgctagtt

upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 3
CAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgatccttcaatctcctgtattatacttggtactaccattctttatgtcctctccataatcaacatattgtttttccttaaacaaaattggagt--
 || ||||| ||||| ||||| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| |||||  |    || | ||||||  |||| |  |  |  |  |   | |  |||| | || |   | | |||       ||   ||| | | ||  |     |  
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaa--tacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213592666|gb|DB955810.1|DB955810
EST:     CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAG                         GCTTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCT
genomic: CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgat ... tgaattgcagGCTTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCT
EST: gi|192297038|gb|FG990324.1|FG990324
EST:     CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAG                         GCTTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCT
genomic: CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgat ... tgaattgcagGCTTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCT
EST: gi|192334448|gb|FK025569.1|FK025569
EST:     CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAG                         GCTTTGGATTACTGCCATTC
genomic: CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgat ... tgaattgcagGCTTTGGATTACTGCCATTC
EST: gi|20813341|gb|BQ297819.1|BQ297819
EST:     CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAG                         GCCTTGGATTACTGCCATTCTCAAGGCATCATGCATAGGGATGTCAAGCCT
genomic: CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgat ... tgaattgcagGCTTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCT
EST: gi|208077290|gb|GD876949.1|GD876949
EST:     CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAG                         GCTTTGGATTA
genomic: CAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgat ... tgaattgcagGCTTTGGATTA