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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTGTGGGATTTTAACTGATGATGGCATAGCTATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacatataccttctaatatgcaattatattttgactccttcagtactacttaatcatacacataatttatttatggttagtactttaactaacattagtgtttgattccttttag

Basic information

species Glycine max
transcript GLYMA11G05190.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G22950.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTGTGGGATTTTAACTGATGATGGCATAGCTATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacatataccttctaatatgcaattatattttgactccttcagtactacttaatcatacacataatttatttatggttagtactttaactaacattagtgtttgattccttttag
 || ||||| ||| | ||||||||||| ||||| ||||||||||| | ||||||||||||||  ||  ||||| |||||||||| |||||||| ||||||||         || ||  || ||  |  ||| |||||  | ||| |  | |  |||| |  | |  |  ||| ||| | |  ||                                   
AGAATGTGGAATTCTCACTGATGATGGTATAGCAATTGAAGGTCCTGTGTTTAGAGAGAAGAACCAAGAAGAGATGCTTGAACTCATTCCCAAGATTCAGgta--------acttttcaagatttagatattttttgctttcttgataagtctttaaac-cataacttttttttttcttgacag-----------------------------------

upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTGTGGGATTTTAACTGATGATGGCATAGCTATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacatataccttctaatatgcaatta--tattttgactccttcagtactacttaatcatacacataatttatttatggttagtactttaactaacattagtgtttgattccttttag
 || |||||||||||||||||||| || ||||| || |||||||| |  || |||||||||| |||  ||||||| || ||||||||||| || ||||||||||    | |  | |  | ||   | |||  | ||||   |   |   |   || ||| | | |  ||  ||  | ||  |                                       
AGAATGTGGGATTTTAACTGATGACGGTATAGCCATCGAAGGTCCCGTATTCAGAGAGAAGAATCAAGAAGAGTTACTAGAACTGATTCCAAAGATTCAGgtgctttttgtttcatgaactaaagacttaattttttttgtttagtttttgaaacataacctttcctatg-ttcttatacag---------------------------------------

upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 3
GGAGTGTGGGATTTTAACTGATGATGGCATAGCTATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacatatacctt---ctaatatgca-attatattttgactccttcagtactacttaatcatacacataatttatttatggttagtactttaactaacattagtgtttgattccttttag
 || ||||| ||| | ||||||||||| ||||| || ||||||||||| ||||||||||||||  |  |||| ||| || |||| ||||||||||||||||| |  | || | |||   ||     |||  ||  |  | || | ||  |||| ||   |||  | ||  | || | |  ||    | |  |||  |   || |||                 
AGAATGTGGAATTCTCACTGATGATGGTATAGCCATCGAAGGTCCAGATTTTAGAGAGAAGAGCGAAGAAGAATTGTTTAAACTAATTCCCAAAATTCAGgtccttcctacatctttatcttcagagcatgttgaaactagaatactaaagtagtaag-aattgttcatctgatctgtgaata--caatttttttcccctcaatag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519533|gb|BM188575.1|BM188575
EST:     TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAG                         GTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
EST: gi|17518979|gb|BM188021.1|BM188021
EST:     TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAG                         GTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
EST: gi|13240205|gb|BG359514.1|BG359514
EST:     TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAG                         GTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
EST: gi|105632291|gb|DW246397.1|DW246397
EST:     TTAGAGAGAAGAGTCGGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAG                         GTTATGGCTCGATCCTCACCTTTAGACAAACACACACTGGTGAAACACTTG
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG