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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAACAACCAATCCCAAGAAGTATTGTGTTCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTGgtactaatgcaaatacaacaatagtgtgcattaatatatatccatttatttgtttaatagtaatttattattttgaatcaatggcttggtgatatttgatattttacag

Basic information

species Glycine max
transcript GLYMA11G03480.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03480.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 3
GTGAAAACAACCAATCCCAAGAAGTATTGTGTTCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTGgtactaatgcaaatacaacaatagtgtgcattaatatatatccattta-tttgtttaatagtaatttatt-attttgaatcaatggcttggtgatatttgatattttacag
||||||||||| ||||| |||||||||||||||||||| || |||||| | ||| |||| |  || ||||||||  |  | |||||| |   | ||       |  || |  ||    | | | || ||| |||||    |  | || | ||  ||||       ||  |  |                    
GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagatgattttgttttgggatttttggtttttgcaattagtttgtgatttctttatatgtttgttttatgctgttgattcag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309969|gb|FK000617.1|FK000617
EST:     TCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTG                         TTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACA
genomic: TCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTGgtactaatgc ... tattttacagTTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACA
EST: gi|298163319|gb|HO012052.1|HO012052
EST:     TCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTG                         TTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACA
genomic: TCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTGgtactaatgc ... tattttacagTTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACA
EST: gi|151411997|gb|EV281808.1|EV281808
EST:     TCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTG                         TTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACA
genomic: TCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTGgtactaatgc ... tattttacagTTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACA