Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAAGGATGCCTTTGATGATGTTTACATTGTTTATGAGTTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAATGATACCACTgtcaggtttccttctatttatattatttcgttttcagttttctattcatattctatacagttttgtattcagattattccttcttattgcataagggctgttaattaagttttgacttgtgcttttcttttgaaattaagcatggtatccatgtttcgtgaaacttgtgcagtactttttatatcag

Basic information

species Glycine max
transcript GLYMA11G02420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 3
CAGAAAGGATGCCTTTGATGATGTTTACATTGTTTATGAGTTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAATGAT-ACCACTgtcaggttt----ccttctatttatattatttcgttttcagttttctattcatattctatacag--ttttgtattcagattattccttcttattgcataagggctgttaattaagttttgacttgtgcttttcttttgaaattaagcatggtatccatgtttcgtgaa-acttgtgcagtactttttatatcag
       ||   |||| |||||||||||||||||| |||||||||||| |||||||| |||||||| || || ||  | |||||  | | |||| ||||||| |||||||    | | |   || |  | |   |       ||   |    | | |||| ||||   |||  || ||  || ||||||        ||| |   | || ||    |    | ||  ||||  | ||          | || |   |  ||||  | |  ||  |||   |  |||  ||  |||
------AGACAACTTTAATGATGTTTACATTGTTTCTGAGTTGATGGATACTGATCTCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgcttccagcttgtgctttgctgaaacattttgcttgcagaaaatctagacagagatttccatgcaccttgttcctttggtcgctatatgttttcttcatcctatccatatttcagcttaacattct--------cttgtttatctggtttaataatcacaagtgacatgttttgcattgcag

upper sequence: GLYMA11G02420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 3
CAGAAAGGATGCCTTTGATGATGTTTACATTGTTTATGAGTTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAATGAT-ACCACTgtcaggtttccttctatttatatt--atttcgttttcagttttctattcatattctatacagttttgtattcagattattccttcttattgcataagggctgttaattaagttttgacttgtgcttttcttttgaaattaagcatggtatccatgtttcgtgaaacttgtgcagtactttttatatcag
      |||   |||  ||||||| |||||||| |||||| | ||||||||||||||||| ||  || |||| ||  |||| || || |  ||| | ||||||||||| ||  ||||||  | ||   ||  || || |    ||| ||| |  || || || ||    |||||           || | |   |    | | |   |  | || | ||   | |  |||||||    ||  |||                                             
------GGAGAACTTCAATGATGTCTACATTGTCTATGAGCTCATGGACACTGATCTTCACCACCTTCTTCGATCAAACCAGCCACTAACAGATGATCACTGTCAGgtctcactctattcttgtttgtttctgtattaaaccatctcttcgttatccat-caattca--attcaagca-------ctaaataactgtaagttttctctcca-ttctaacacatccccttcttttttttttttgcag--------------------------------------------

upper sequence: GLYMA11G02420.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 3
CAGAAAGGATGCCTTTGATGATGTTTACATTGTTTATGAGTTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAATGAT-ACCACTgtcaggtttccttctatttatattatttcgttttcagttttctattcatattctatacagttttgtattcagattattccttcttattgcataagggctgttaattaagttttgacttgtgcttttcttttgaaattaagcatggtatccatgtttcgtgaaacttgtgcagtactttttatatcag
      ||| |  || | ||||||||| || |||| |||||| ||||| ||||||||||||||||||||||| ||  ||||| || | |||||| | || ||||||||      |  ||| || | |    | ||   |  | |  |    ||    |||  |    ||||  | | || |||||| |||||                                                                                                
------GGAAGATTTCGTTGATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGATCAAACCAATCTTTGAATGATGATCATTGTCAGgta-----cggtttttactctgctatatttgatactatggttgatttaatcacaagt---gattc--actttttcttctt-ttgcag-----------------------------------------------------------------------------------------------

upper sequence: GLYMA11G02420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 3
CAGAAAGGATGCCTTTGATGATGTTTACATTGTTTATGAGTTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAATGAT-ACCACTgtcaggtttccttctatttatattatttcgttttcagttttctattcatattctatacagttttgtattcagattattccttcttattgcataagggctgttaattaagttttgacttgtgcttttcttttgaaattaagcatggtatccatgtttcgtgaaacttgtgcagtactttttatatcag
      |||  | ||  ||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||| | || |  ||| | || |||||||| ||   ||   |||  |   || | ||     || |  | ||| |  ||    | |    ||   | |  ||     |    | | |  | |||   ||||                                                                               
------GGAAACTTTCAATGATGTCTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATCATTTGTTCTAACCAATCCCTCACCGATGATCATTGTCAGgtatctcactgactattgttggtcatctt--accttgtcattataattaatgagctctaaccttgtaacttatctgcaatgagtcttgactgttgtcc-ttaa-------------------------------------------------------------------------------