1 5' 3' | 2 5' 3' | 3 5' 3' |
CATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaacattcttcctcatggtttttacttttttactatgatttttctgtgtttgaccaaatattcaaatgtgattgttttcaacag
species | Glycine max |
transcript | GLYMA11G02410.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCTGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCTGTGGTGACCGTGATGGEST: gi|14990519|gb|BI316192.1|BI316192
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|208101481|gb|GD899022.1|GD899022
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: CGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|15204011|gb|BI426708.1|BI426708
genomic: CGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|4301666|gb|AI443223.1|AI443223
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: CCAAGCCCGCGGGAAGACCATTCG-TGGCCCAACCCGG--ATCGCCCCAG GGGCCCACCTCGCTTTGACEST: gi|18734269|gb|BM528086.1|BM528086
genomic: CCAAGCCCGCGGGAAGACCATTCGGTGGCCCA-CCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGAC
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|21676898|gb|BQ629249.1|BQ629249
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|22541467|gb|BU091310.1|BU091310
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAN GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|10844274|gb|BF067584.1|BF067584
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|298189969|gb|HO031634.1|HO031634
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGCGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGGGATTCGGTGGTGACCGTGATGGEST: gi|15338023|gb|BI498679.1|BI498679
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|298163410|gb|HO012143.1|HO012143
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|298198100|gb|HO039639.1|HO039639
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|5820037|gb|AI988243.1|AI988243
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|20448412|gb|BQ252536.1|BQ252536
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTEST: gi|7146276|gb|AW508130.1|AW508130
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTT
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|5606370|gb|AI900524.1|AI900524
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCTCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCEST: gi|13252336|gb|BG363239.1|BG363239
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTC
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|4314073|gb|AI461192.1|AI461192
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|208298767|gb|GE096292.1|GE096292
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|10845562|gb|BF068656.1|BF068656
genomic: GCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|12774031|gb|BG238958.1|BG238958
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|20207847|gb|BQ133936.1|BQ133936
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTEST: gi|19052687|gb|BM731354.1|BM731354
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGT
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|298180908|gb|HO022347.1|HO022347
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|27424478|gb|CA935998.1|CA935998
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|14259594|gb|BG882502.1|BG882502
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|8284522|gb|BE022090.1|BE022090
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTATGACGGAGAGAGGAGATTCGGTGGTGACCGTAATGGEST: gi|18734547|gb|BM528246.1|BM528246
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|8827009|gb|BE210739.1|BE210739
genomic: GGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|15338149|gb|BI498805.1|BI498805
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|298183411|gb|HO028624.1|HO028624
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGCGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGEST: gi|9900485|gb|BE609453.1|BE609453
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
EST: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAG GGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
genomic: GCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaa ... ttttcaacagGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGgtaattttaacattcttcctcatggtttttacttttttactatgatttttctgtgtttgaccaaatattcaaatgtgattgttttcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA