1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACACTATTTGCAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttatataatgggtgcttcatttttccctttacttactcttgcttgatttcttcatgttttacatatataactctccagataacttgaagttctttaacattacag
species | Glycine max |
transcript | GLYMA11G02340.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCGATGTAGTTGTTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTACCTGGCCAAGATGCCTATCATTACCAACCEST: gi|208171345|gb|GD973198.1|GD973198
genomic: GCGATGTAGTTG-TTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTT-CCTGGCCAAGATGCCTATCATTACCAACC
EST: AGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCEST: gi|207780523|gb|GD751716.1|GD751716
genomic: AGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGC
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATEST: gi|193676052|gb|FK617826.1|FK617826
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTAT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATEST: gi|193395648|gb|FK362215.1|FK362215
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTAT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|207704051|gb|GD684977.1|GD684977
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|193389480|gb|FK354365.1|FK354365
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: GCGATGTAGTTGTTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|208155141|gb|GD956292.1|GD956292
genomic: GCGATGTAGTTG-TTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|208138863|gb|GD938105.1|GD938105
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCEST: gi|207825580|gb|GD797291.1|GD797291
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGC
EST: AAAAGGAAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAEST: gi|208321460|gb|GE119541.1|GE119541
genomic: AAAAGGAA-TATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAA
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|192329164|gb|FK021459.1|FK021459
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAG-AATATCAGCAAGCGATGTAGTTGTTGACTTCG-TGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCA-GATGCCTATCATTACCAACCTEST: gi|193390519|gb|FK356439.1|FK356439
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: TATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|208092101|gb|GD889306.1|GD889306
genomic: TATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGNTGCCTATEST: gi|193592990|gb|FK548826.1|FK548826
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTAT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|208057839|gb|GD858542.1|GD858542
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTEST: gi|207825464|gb|GD799345.1|GD799345
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTG-CGTTCCTGGCCAAGATGCEST: gi|208242623|gb|GE041467.1|GE041467
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGC
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTEST: gi|193461286|gb|FK428825.1|FK428825
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGEST: gi|193320943|gb|FK287696.1|FK287696
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAG
EST: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATG CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
genomic: CAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttat ... aacattacagCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACACTATTTGCAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGgtaggtttatataatgggtgcttcatttttccctttacttactcttgcttgatttcttcatgttttacatatataactctccagataacttgaagttctttaacattacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG