Sequence
atgc intronic sequence ATGC exonic sequenceGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgtatcattctaaaattttcttcatcttctattatttaactatgccagttctggtgatttctgaagcagtgacattgtggtgaatttatagtggtaaaattttattttaattttcatggtgtttacag
Basic information
species | Glycine max |
transcript | GLYMA11G01940.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 6
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgta----tcattctaaaattttcttcatcttctattatt-taactatgccagttctggtgatttctgaagcagtgacattgtggtgaatttatagtggtaaaattttattttaattttcatggtgtttacag
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GTTAGAGATTACATTCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAGATGATCTCAAAATCAgtaaggattatcttaaaactctttgatgtttctactctcatcattat-tcgccattggtcaggcttaatact----tgttatggtcag--------------------------------------------
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 6
lower sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgtatcattctaaaattttcttcatcttctattatttaactatgccagttctggtgatttctgaagcagtgacattgtggtgaatttatagtggtaaaattttattttaattttcatggtgtttacag
||||| ||||||||||||||| |||||||||| ||||| ||||| || || | | ||| ||||| ||| || || ||||| || |||| | | |||| |||| || ||| |||| | | | | || ||| || || | ||
GTTCGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTAGAAGATTGCAAGATCGgtat---attatgatttccattcgtttctcttatcta-ctacaatcattctcaagtctcttaactttgtttgtgtgttgtttatattcag-------------------------------------
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 6
GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgt-atcattctaaaatt-ttcttcatcttctattatttaactatgccagttctggtgatttctgaagcagtgacattgtggtgaatttat--agtggtaaaattttattttaattttcatggtgtttacag
|| || |||||||| |||||||||||||| ||||||||||||||||| || ||| || ||| | | | |||||| | ||||| ||||| ||||| || ||| || | || | | | | | || | ||| ||| ||||| | |||| || |
GTCCGTGATTACATCCATGTTGTTGATTTGGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattctgaaattgttctttgtccatgattggtttcatgtgaaaat----atcaaatttgcttctttgat-ttgcttccaatttgctaaatggttgcatat--------------------------
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 6
GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgt-atcattctaaaattttcttcatcttctattatttaactatgccagttctggtgatttctgaagcagtgacattgtggtgaatttatagtggtaaaattttattttaattttcatggtgtttacag
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GTACGGGATTACATTCATGTTGTGGATTTAGCAGATGGGCACATTGCAGCCTTGCACAAGCTACTCAACTCAGAAATAGgttagtgttttgaaattgtcct--ttgtttatgatccgtctgctttcaaattgctaaatgactggatatattagttatactatcccaaaaatgaccaagtgt--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9902956|gb|BE611924.1|BE611924EST: AGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAG GTTGTGAGGTTTATAACCTGNGAACAGGAAAGGGAACATCAGTTTTGGAGA
genomic: AGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgtatcattct ... gtgtttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGgtatcattctaaaattttcttcatcttctattatttaactatgccagttctggtgatttctgaagcagtgacattgtggtgaatttatagtggtaaaattttattttaattttcatggtgtttacag
- - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - TGCTGC