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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAGCTTGGATTTACATTCTCCTTTCCTGTGAAACAAATGTCTGTATCTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGTAGATATGgttagtcagttgactttcaagcagtttctaaatgaatgcttgtattgtgatagatagcaattctcgtataatatttatcctaaaacttgatcactaactt...

Basic information

species Glycine max
transcript GLYMA11G01820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
AAGGGAGCTTGGATTTACATTCTCCTTTCCTGTGAAACAAATGTCTGTATCTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGTAGATATGgttagtcagttgactttcaagcagtttctaaatgaatgcttgtattgtgatagatagcaattctcgtataatatttatcctaaaacttgatcactaactt---
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AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaact--tatactcttgattgctccacaacaattttaaactttaatggaagggac-tgatagagttgttttgaaaagttcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322469|gb|GR837883.1|GR837883
EST:     CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGTAGATATG                         GTAGGAAGAGATGTTGCAGCATGTTTGCAAGAAGCATTGACAAGGAAAGGC
genomic: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGTAGATATGgttagtcagt ... ttgttgtcagGTAGGAAGAGATGTTGCAGCATGTTTGCAAGAAGCATTGACAAGGAAAGGC