1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctttctccactgtcccccctccctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatata...
species | Glycine max |
transcript | GLYMA11G01340.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTTEST: gi|17519493|gb|BM188535.1|BM188535
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
EST: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTTEST: gi|213593699|gb|DB971721.1|DB971721
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
EST: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTTEST: gi|192326479|gb|FK017256.1|FK017256
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
EST: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTTEST: gi|151394898|gb|EV264769.1|EV264769
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
EST: AGTCGTGATGTAACAATGGATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTTEST: gi|298182210|gb|HO026385.1|HO026385
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
EST: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTTEST: gi|298174665|gb|HO014696.1|HO014696
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
EST: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG GATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
genomic: AGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctt ... tcttaataagGATGAGTAAATACAATAAAGTGGAAATACTTGAGAAAGCTGAAAAGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatctctttctccactgtcccccctccctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc