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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTgtgagtctaattgtcctctagtgacaagtacctgctttatttcttactaaatgcttcacagtatcaaataaacaacaatgttcatagaatttattgtatt...

Basic information

species Glycine max
transcript GLYMA11G00680.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00680.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 3
GCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTgtgagtctaattgtcctctagtgacaagtacctgctttatttcttactaaatgcttcacagtatcaaataaaca---acaatgttcatagaatttattgtatt
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GCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTTgtaagttt--ccagcttcttatgttttaaatttgatgggatgtgtatggtttattgaatgatactcaacaagaactcacaatgaccatgctcttacttattt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23734526|gb|BU765499.1|BU765499
EST:     TGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTT                         TTGATTGCTACTGCTGCCCTTTTTCTTGTTGGA
genomic: TGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTgtgagtctaa ... tctgccacagTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGA
EST: gi|17021043|gb|BM092077.1|BM092077
EST:     TGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTT                         TTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCG
genomic: TGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTgtgagtctaa ... tctgccacagTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCG