Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGTGTCGGTGTTTGCACTGTAACTGATGTAAAAGTTAACCTCAAAGGTTTCATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtattatttaatgtttcttctccaatatgctggtgatataaaattgattgctatttctgttgtggtttcctttacacctgtcattttatagatatt...

Basic information

species Glycine max
transcript GLYMA11G00210.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
TATTGGTGTCGGTGTTTGCACTGTAACTGATGTAAAAGTTAACCTCAAAGGTTTCATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtattatttaatgtttcttctccaatatgctggtgatataaaattgattgctatttctgttgtggtttcctttacacctgtcattttatagatatt-
||| || || ||||| ||||||||||||||||| ||||||||    ||||||||||| ||||||||| |||||||  ||||||||||||| ||||||||||| |||||    |||| || ||  |    |    |  | || ||||      ||  |   ||| ||   |   |  |  ||   | ||||| |   |    
TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaat-ttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208146755|gb|GD948832.1|GD948832
EST:     TATAGCAGTTTTGTTCAACATCTTTACAGCAAATT                         TCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG
genomic: TATAGCAGTTTTG-TCAACATCTTTACAGCAAATTgtaagtatta ... cttgtaacagTCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG
EST: gi|193432200|gb|FK395664.1|FK395664
EST:     CATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATT                         TCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATC-TTTGAATTGCTG
genomic: CATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtatta ... cttgtaacagTCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG
EST: gi|5606254|gb|AI900352.1|AI900352
EST:     GTTTCATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATT                         TCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG
genomic: GTTTCATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtatta ... cttgtaacagTCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG
EST: gi|208313377|gb|GE117305.1|GE117305
EST:     TTTCTATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATT                         TCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG
genomic: TTTC-ATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtatta ... cttgtaacagTCAATAGGTTCTCTTCAAAAGAAATATTCAATTGGATCTTTTGAATTGCTG