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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAACTCAAATTTGATCGAGGGTCGCTGGCAGCTAATTTTCACCACAAGACCTGGAACTGCATCGCCCATTCAGTTTCTgtcttgccttttttttttttctgaatgtccaatgaaacatattttccaattttatttatttttacttatatttttattattgtctagattataccacgtg...

Basic information

species Glycine max
transcript GLYMA10G44120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G51110.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAAACTCAAATTTGATCGAGGGTCGCTGGCAGCTAATTTTCACCACAAGACCTGGAACTGCATCGCCCATTCAGTTTCTgtcttgccttttttttttttctgaatgtccaatgaaacatattttccaattttatttatttttacttat-atttttattattgtctagattataccacgtg-
||| | ||  |  | ||||| ||||| ||||   | || |||||||||||||||||||||||||| || || ||  |    ||||  |     ||  |      || |||| |        |||    ||  |  | |||| |   ||  |     |  | ||    ||||   |   |   
ACAGATTCTGACCTAATCGAAGGTCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATCCAAgtcagttcttctcacacattcatcatcatatctccattt-------tttctagatgattgtaatttgtgtgtaagaagaagagcaatggaaggatttgtctctgcag

upper sequence: GLYMA10G44120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g01220.t01 (Vitis vinifera), 5'ss of exon 3
ACAAACTCAAATTTGATCGAGGGTCGCTGGCAGCTAATTTTCACCACAAGACCTGGAACTGCATCGCCCATTCAGTTTCTgtcttgccttttttttttttctgaatgtccaatgaaacatattttccaattttatttatttttacttatatttttattattgtctagattataccacgtg
|||| ||| | ||| || || ||||| |||||| |||| ||||| |||||||| ||||||||||| || |||||| || |  | | |  | | |   | | |    || ||||   | |  | || |   |  || |    || ||||| || | || |||  |||   |  |       
ACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAGgtttttacattctctgtatccctattta---gttcaatattaaaattatttctggtgaatgtgaactttcttatgttct-ataatttactaaggttcatggttc-