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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataattgcatcttgttttgttctcattctctctacattgtgatctacgtcttgcaattcctggtgttttacccatgagaattgtttttttctttgttttactcttgtag

Basic information

species Glycine max
transcript GLYMA10G43990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataattgcatcttgttttgttctcattctctctacattgtgatctacgtcttgcaattcctggtgttttacccatgagaattgtttttttctttgttttactcttgtag
|||||||||| ||||| ||||| |||||  | || || |||||||||||| ||||||| || || |||||||| ||||  ||||||||||| || ||||||||    | ||   | || |  ||    | ||   | | || | |  |    ||  |||||     |     | |  ||||    ||||                         
TTGGTCAGGGTATTGCAAATGCAGTTGGGCTGGCCCTTGCTGAGAAGCACCTGGCTGCTCGTTTCAACAAGCCCGACAGCGAGATTGTTGATCACTACACgta----attttttttttatcatgaatacctttagttttcactttagttatggtggtgcaaccttggtaacatgattcatggattttgtgcag---------------------

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G033208_T01 (Zea mays), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataattgcatcttgttttgttctcattctctctacattgtgatctacgtcttgcaattcctggtgttttacccatgagaattgtttttttctttgttttactcttgtag
|||||||||| || |||||||| ||||| || ||||| |||||||||||| ||||||| || || ||||||||||||| |||||| || ||||| ||||||||  ||| ||  |              ||   ||||    || | |    | |  |   | ||   |||    |    ||  ||    |||  |   |  | |||        
TTGGTCAGGGTATCGCCAATGCCGTTGGGTTGGCACTTGCTGAGAAGCACCTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgta--atacttctaataacgccaacgtgcagcgtctcgcttttattacagtcttgcttttagtctgtgtggcacagttttggtaacatgtttcgtggatcctgtacag------

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggata-attgcatcttgttttgttctcattctctctacattgtgatctacgtcttgcaattcctggtgttttacccatgag-aattgtttttttctttgttttactcttgtag
|||| || || || || ||||||||||| ||||| || ||||||||||| ||||||||  |||| ||||| |||||   |||  | || ||||| ||||||||  ||| ||  |   | ||| |||| || ||||   |   |||| || ||  |||   |||    |   |  |     |||   ||||| |                       
TTGGACAAGGAATCGCTAATGCTGTTGGTTTAGCTCTTGCTGAGAAGCATTTGGCTGCTAGATTCAACAAACCTGATGCTGAAGTAGTCGACCACTACACgtaatatatataacccatagttatgttgtcgttct---tggtttgt-atatagctctgataata---gaaatactgtttttgattgattgtctag---------------------

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataattgcatcttg--------ttttgttctcattctctctacattgtgatctacgtcttgcaattcctggtgttttacccatgagaattgtttttttctttgttttactcttgtag
|||| || || ||||| ||||||||||| ||||| || || |||||||| ||||||||  |||||||||| ||||||||||||||||||||||| |||||||| |||  |  |  |||         |||| || | ||  |   |  |||||||| |  ||      | | ||   | ||                                         
TTGGACAAGGTATTGCAAATGCTGTTGGTTTAGCTCTTGCGGAGAAGCATTTGGCTGCTAGATTTAACAAACCTGACAATGAGATTGTTGACCACTACACgtaagattttgactccttcaacggcacttttattgttatctttcttggattgtgatgt-tgtaaactgactgctttggattag---------------------------------------

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataattgcatcttgttttgttctcattctctctac-attgtgatctacgtcttgcaattcctggtgttttacccatgagaattgtttttttctttgttttactcttgtag
|||||||||| ||||||||||||||||| || ||    |  |||||||| ||||||||| |||| ||||| ||||||||||||||||| ||||| ||||||||    |||      |  |  ||||||  |||| | | | ||    || ||     | ||||   | | |  ||||   |  |    |||||||  | |   ||| ||||    
TTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCACTACACgta----aatcctcattcttggtgttcttgttctgtttcctatctcaatgta-----tacaatcatttg-gccttacttgtttg----gttttttgatattgattattcttag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825831|gb|BE209561.1|BE209561
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTT
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataat ... actcttgtagATATGTTATATTGGGTGATGGTT
EST: gi|209701314|gb|BW655909.1|BW655909
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCNAATGAAGC
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataat ... actcttgtagATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
EST: gi|193536388|gb|FK489628.1|FK489628
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataat ... actcttgtagATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
EST: gi|18692759|gb|BM521607.1|BM521607
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataat ... actcttgtagATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC