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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGgtatgtacttcatttttgttaaattataggatgcagtaaaattttcatctcacattacagttgtttggtttgcaacctggatggtgtaaatattaacatatttttcttctaattatttgtttgattgcag

Basic information

species Glycine max
transcript GLYMA10G43810.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43810.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 3
GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGgtatgtacttcatttttgttaaattataggatgcagtaaaattttcatctcacattacagttgtttggtttgcaacctggatggtgtaaatattaacatatttttcttctaattatttgtttgattgcag
|||| ||||||||  | || || ||||| || ||||||||||| || |||||||| |||||||||||  | || |||||||| |||||| | || || ||||||        | ||| |  ||  || ||          ||   ||||    |    || | ||  ||   |||   || | |   | |                                       
GTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatga-------tgttggtggatcttatgagaacaatttcttgctatcttttttcctggtgggttatttcataac--agaagattctattgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315402|gb|FK009204.1|FK009204
EST:     GAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAG                         TTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGAGGC
genomic: GAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGgtatgtactt ... ttgattgcagTTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGAGGC
EST: gi|298180459|gb|HO022012.1|HO022012
EST:     GAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAG                         TTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGAGGC
genomic: GAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGgtatgtactt ... ttgattgcagTTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGAGGC
EST: gi|298191566|gb|HO039045.1|HO039045
EST:     GAATCTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAG                         TTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGAGGC
genomic: GAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGgtatgtactt ... ttgattgcagTTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGAGGC