Sequence
atgc intronic sequence ATGC exonic sequenceAGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgtttgagaagttgtagctctggcactggcaatattttatgtttaatttatataagctctttattttgaagggtccgagtgtgtcctgtgaactg...
Basic information
species | Glycine max |
transcript | GLYMA10G43550.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 3
AGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtga--ttgtttgagaagttgtagctctggcactggcaatattttatgtttaatttatataagc-tctttattttgaagggtccgagtgtgtcctgtgaactg-
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GGCTGTTGTGAACGAATTCTATTCCAGAGTGTTAAACAATGGCGACATATATAGAGCTGATTATGAAGGACTTTATTGTGTGAGCTGTGAAGAGTACAAGgtaagctttcatgtcaacttcctcacatcgtactga-gctgtttccaatcca--ttatggaagtaccattaaacatattaatccttacacatatt-tgatttaa
upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgtttgagaagttgtagctctggcactggcaatattttatgtttaatttatataagctctttat-tttgaagggtccgagtgtgtcctgtgaactg
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AGCTATTGTAAAAGAGTTCTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAGgtt-tgattttgaaatttggaa---aggtatatatactttcttgcctgtgcc----acaagctttatgggtctgctttgtttt--tgaattctgtag----
upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 3
AGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgtttga----gaagttgtagctctggcactggcaatattttatgtttaatttatataagctctttattttgaagggtccgagtgtgtcctgtgaactg
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AGCAATTGTAAAGGAGTTCTACTCAAGGGTTCTTGCCAATGGTGATATTTATCGGGCTGATTATGAAGGACTTTATTGCATCAATTGTGAAGAGTATAAGgtggtaccttgcatttggagtagcaattctggatgtagtaata----atctcttgttttgatgagcattccttttatgaagcctaaagttagttgtatggataaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209711276|gb|BW665328.1|BW665328EST: ACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAG GATGAGAAGGAACTTCTTGATAATAATTGTTGTCCAGTTCACCTAAAGCCT
genomic: ACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgttt ... tctgatgcagGATGAGAAGGAACTTCTTGATAATAATTGTTGTCCAGTTCACCTAAAGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgtttgagaagttgtagctctggcactggcaatattttatgtttaatttatataagctctttattttgaagggtccgagtgtgtcctgtgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT