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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcactttagtttttctcttaaattttgtttcctaatcataacatactgtgttcaattcag

Basic information

species Glycine max
transcript GLYMA10G43230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G139583_T02 (Zea mays), 5'ss of exon 3
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcactttagtttttctcttaaattttgtttcctaatcataacat-actgtgttcaattcag---
 ||||||||||| ||||||||||| ||||| ||||||||| |||  |||||||||||  | | ||| ||||| || ||||||   ||  | ||||| ||||||||   | || | |  ||  | ||| |  |  | ||   ||  |     ||  ||   | | |    | | |   
AATTCTTGATGGAGTGGATGACCTTATGCAGCTAAGTTATCTAAGTGAACCATCAGTGCTGTACAATCTGCAGTACAGATACTCCCAGGACATGATTTATgtaagaagtgatgtgaactttttattttttatggaattcaattaatggctttattattgatatttatcgtactgtag

upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G113202_T01 (Zea mays), 5'ss of exon 3
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcactttagtttttctcttaaatt--ttgtttcctaatcataacatactgtgttcaattcag
 ||||||||||| |||||||| || ||||| ||||||||| |||  |||||||||||  | | ||| ||||| || ||||||    |  ||||||| ||||||||   | || | |  ||  |||||   || ||||  | | ||  | ||    |  ||  ||  |  |     
AATTCTTGATGGAGTGGATGATCTTATGCAGCTAAGTTATCTAAGTGAACCATCAGTACTGTACAATCTGCAGTACAGATACTCCAAGGATATGATTTATgtaagaagtgatgtaaactttttttttgagttcaattaatggctttattattgatatttatcgtactgtag----

upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 5'ss of exon 4
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtc-tttatatcactttagtttttctcttaaattttgtttcctaatcataacat--actgtgttcaattcag--------------------------------------------------
|||||||||||| || || || ||||||||||||||||||||||| || ||| |||| || | ||||||  | ||||| ||||| ||  | ||||| |||||||| | ||| |   | |  ||||| | | ||      ||||  | |    |    |  ||| | |  | |  |                                                   
TATTCTTGATGGAGTAGACGATCTCATGCAACTAAGTTATTTAAATGAGCCAGCAGTGTTGTACAACCTTGAGTATAGGTACAACCAGGACATGATATATgtaagccgtttgtgctaatacagtttattttttctgacatgttgacaatctcttctctgaactatatatagtaaaatgttataccctttactatttgcttttctgaattttcctttatggtgctag

upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtcttt----atatcactttagtttttctctta----aattttgtttcctaatcataacatactgtgttcaattcag-------------------------------------------
|||||||||||| ||||| || || ||||| || ||||| ||||| || |||||||| || | ||||||  | ||||| ||||| ||  | ||||| |||||||||||||     |   | |||  |||     | |    |||  | |||||     ||    |||| | |    | |||                                           
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag

upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcactttagtttttctcttaaattttgtttcctaatcataaca--tactgtgttcaattcag-------------------------------
||| ||||| || || |||||||| |||||||| ||||| ||||| || ||||| || || | ||| || ||| |||||||||||||  ||||||| ||||||||| ||||| |  |||       | | ||  | |||| |||  ||   |  ||  | || |  |   || |                                
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatattttttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag