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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGAGTCTGTAAGACAGGAGCTGCATGCTTCGCATCCTGATGACCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcacttttagctcataatgttgcttttctagttgctagagatggatatttatcttttctataaacacttcacacctcttaatatcattttaaatt...

Basic information

species Glycine max
transcript GLYMA10G42910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42910.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 3
GATAGAGTCTGTAAGACAGGAGCTGCATGCTTCGCATCCTGATGACCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcacttttagctcataatgttgcttttctagttgc-tagagatggatatttatcttttcta-taaacacttcacacctcttaatatcattttaaatt--
 ||||||||||| ||||||||||||||| ||  ||| || || |||    | ||||| |||||||||||||||||||||||||| | ||| ||||| || |||| ||| | || || |  | |  || |  |  |  |   | |  ||  |  |    |  |  || ||| |||||   ||  |||| ||  | |  |  |   
TATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcattctttgcacg-agtactggtcattgatatatgttgttatacagctagggcagtattactaagcactt---actacttagtagaactggagttgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208132259|gb|GD932964.1|GD932964
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCG
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCG
EST: gi|208288560|gb|GE088787.1|GE088787
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA