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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGTGGGTGTAGGTTTTGTGCTGTGAAGACCAGCAGAAACCCTCCACCTCCTGATCCTATGGAACCGATAAATACTGCCAAGGCCATTGCAAGTTGGGGgtgagtgtgagctttctgctatttattatgtatggttgtgtgttttatgttcttaaacctttttggattaatttctatcaaacttgtacgcctcagcttt...

Basic information

species Glycine max
transcript GLYMA10G42600.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G08415.1 (Arabidopsis thaliana), 5'ss of exon 2
CGCGTGGGTGTAGGTTTTGTGCTGTGAAGACCAGCAGAAACCCTCCACCTCCTGATCCTATGGAACCGATAAATACTGCCAAGGCCATTGCAAGTTGGGGgtgagtgtgagctttctgctatttattatgtatggt-tgtgtgttttatgttcttaaacctttttggattaatttctatcaaacttgtacgcctcagcttt
| ||||| ||||| || |||||||| || || || ||||| ||||| |||||||| || ||||||||    || |||||||||||||| || ||||||||||  ||      | | || |   |  | ||  |  | ||  | | || |  | |  |  || ||     |  | |  |  |   ||       |  | |  
CTCGTGGCTGTAGATTCTGTGCTGTTAAAACAAGTAGAAATCCTCCTCCTCCTGACCCAATGGAACCAGAGAACACTGCCAAGGCCATAGCCAGTTGGGGgtatgtaacttttatttgattcctgatctgagtaatctgcttatattgtcctttagattctcttcatggtcgtgttcagaatttttaactagataggata-

upper sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0071g01020.t01 (Vitis vinifera), 5'ss of exon 2
CGCGTGGGTGTAGGTTTTGTGCTGTGAAGACCAGCAGAAACCCTCCACCTCCTGATCCTATGGAACCGATAAATACTGCCAAGGCCATTGCAAGTTGGGGgtgagtgtgagctttctgctatttattatgtatggttgtgtgttttatgttcttaaacctttttggattaatttctatcaaacttgtacgcctcagcttt------
| ||||| ||||| |||||||||||||| ||||| ||||||||| |||| ||||| || ||||||||   ||| ||||| ||||||||||||||||||||||  || |    | |      | |||| | ||| ||||   |  |    ||    ||  |   |  ||||   | |   ||| ||  | || ||    |       
CTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTAGAAACCCTGCACCACCTGACCCAATGGAACCAGAAAACACTGCTAAGGCCATTGCAAGTTGGGGgtaggtct----tatacaaagtctattttttattgttgaa-gcatagcattaaataatgtaaata-attacactttgctaaagtttaatgcttctatgtatgttgt