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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacagtttgctatgttatgaatatttttaatgttactatcattttggcttttcccttttttgggatatggtaagacaaaaaagcttaatccatctttaggggttatgtaaacgttatctaacaattatgcattcattgcag

Basic information

species Glycine max
transcript GLYMA10G42180.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587005|gb|DB959510.1|DB959510
EST:     AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG                         GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
EST: gi|192297148|gb|FG988244.1|FG988244
EST:     AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG                         GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
EST: gi|26056311|gb|CA799225.1|CA799225
EST:     AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCACCATCAACCAAG                         GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
EST: gi|298187376|gb|HO034525.1|HO034525
EST:     AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG                         GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCGGTAGTT
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT