1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAgtattattactcacttttttttacccattatatgcagtagttttgttgttagattttttctttataggaatttatgttcctgtag
species | Glycine max |
transcript | GLYMA10G40730.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCEST: gi|207817232|gb|GD787513.1|GD787513
genomic: GTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAgtattattac ... gttcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: CTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCEST: gi|208070000|gb|GD868773.1|GD868773
genomic: CTTGAAGTTGCTGAGCTGAAATCTAAgtattattac ... gttcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
genomic: GTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAgtattattac ... gttcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAgtattattactcacttttttttacccattatatgcagtagttttgttgttagattttttctttataggaatttatgttcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA