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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttcatttgtcctttagctctaaatacatgttttacttttcttactaaatgtttcaatgagaaccacatcatccgtagattttttctgtacttt...

Basic information

species Glycine max
transcript GLYMA10G39550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39550.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 3
GCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttcatttgtcctttagctctaaat---acatgttttacttttcttactaaatgtt--tcaatgagaaccacatcatccgtagattttttctgtacttt
||||||||  |  ||||| || || |||||| | |||||||| || ||||||||||| || ||||||||||||||||||||||| ||||| ||  |   |||  | | |||||   |   | | |   |   ||| | |||| |  ||||  |||||  ||  ||    |   | || || || || 
GCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTTgtaagtttccagct--tcttatgttttaaatttgatgggatgtgtatggtttattgaatgatactcaacaagaact-cacaatgaccatgctcttact-tattt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311128|gb|FK004467.1|FK004467
EST:     TGTGCCACCGTTTCTTTGT-CGAC-ATCACATGCTTGC-ATGATAGATTT                         T-GATTGCTACTGCTGCTCTTTT
genomic: TGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttc ... tgtgctgcagTTGATTGCTACTGCTGCTCTTTT
EST: gi|192311129|gb|FK004468.1|FK004468
EST:     TGTGCCACCGTTTCTTTGTTCGACAATCACATGCTTGCCATGATAGATTT                         T-GATTGCTACTGCTGCTC
genomic: TGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttc ... tgtgctgcagTTGATTGCTACTGCTGCTC