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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCCTGCACGATAATTTTGTgtgagcatcactcctttttctgtgcagaatttagctttgaacttcataagattgacaagtaatcccaatcaacagtattttaataaaaaaacaatgcgtaagaaattgatatgtattttgtcaaactctgttaataatag

Basic information

species Glycine max
transcript GLYMA10G39540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 3
ATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCCTGCACGATAATTTTGTgtgagcatcactcctttttctgtgcagaatttagctttgaacttcataagattgacaag--taatcccaatcaacagtattttaataaaaaaacaatgcgtaagaaattgat--atgtattttgtcaaactctgttaataatag
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ATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGTgtgagtatcgctctgtttatttggctaaattacaactgagttttgttacaattgtcaatgctagtttttat-atttgactgcccatgtattttttgcatttagaaaattatctaaattatttcttccaacatt-ttgaggatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605762|gb|DB968594.1|DB968594
EST:     ACCAAGTTTCCTAATCATCCTGAAATTGGTACCCTGCACGATAATTTTGT                         GCGCTCAGTTGACACCTTTCGAGACTACAAATATCTGGGAACACGTGTCCG
genomic: ACCAAGTTTCCTAATCATCCTGAAATTGGTACCCTGCACGATAATTTTGTgtgagcatca ... ttaataatagGCGCTCAGTTGACACCTTTCGAGACTACAAATATCTGGGAACACGTGTCCG